Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   MZO21_RS11900 Genome accession   NZ_CP096120
Coordinates   2395596..2396753 (+) Length   385 a.a.
NCBI ID   WP_248103087.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2390596..2401753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS11885 (MZO21_11880) - 2392298..2394364 (-) 2067 WP_154773702.1 TonB-dependent copper receptor -
  MZO21_RS11890 (MZO21_11885) - 2394435..2394860 (-) 426 WP_248103093.1 DUF2946 family protein -
  MZO21_RS11895 (MZO21_11890) def 2394945..2395475 (-) 531 WP_248103090.1 peptide deformylase -
  MZO21_RS11900 (MZO21_11895) tsaP 2395596..2396753 (+) 1158 WP_248103087.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MZO21_RS11905 (MZO21_11900) dprA 2396764..2397921 (+) 1158 WP_248103084.1 DNA-processing protein DprA Machinery gene
  MZO21_RS11910 (MZO21_11905) - 2397961..2398530 (+) 570 WP_248103081.1 Sua5/YciO/YrdC/YwlC family protein -
  MZO21_RS11915 (MZO21_11910) - 2398924..2399808 (-) 885 WP_248103078.1 DMT family transporter -
  MZO21_RS11920 (MZO21_11915) - 2399959..2400708 (+) 750 WP_154773708.1 AraC family transcriptional regulator -
  MZO21_RS11925 (MZO21_11920) - 2400898..2401440 (+) 543 WP_248103075.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42343.69 Da        Isoelectric Point: 9.3548

>NTDB_id=679584 MZO21_RS11900 WP_248103087.1 2395596..2396753(+) (tsaP) [Acinetobacter portensis strain JNE5]
MKKVLKDTSSLRVLGFKKQILALAVCFGVGLGTISIAEAAPSRNVNPPALKVNAPNVYIVKKGDTLWDISKKFLKNPYRW
REIWAGNKHVKNPHWIFPGDRLLMCTYNGKPLIGKDEGDGCDGIIRRYDNQTINLQPQVRVESLNNTIPVIPLDSIKNWL
ERSTIVPVNSTKNIPYVVGAKDQRVLAAKGQNIYVRGNGLEIGQRYSVYRENDPYIMLDAKGKKYNAGLELVEVASGIAT
KQAGDITTLEVTDSYNSEIRRGYFVMQEYEAMLPTLFYPVNAEEVIAGGKVIRVQGSIGAAAVGSVVSLDRGTNQGVKVG
HVFNVNELGQTIKDQVTNETIQLPSENVGSVMVFKAFDNISYAYVLESSLPINVGAALTPPIMND

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=679584 MZO21_RS11900 WP_248103087.1 2395596..2396753(+) (tsaP) [Acinetobacter portensis strain JNE5]
ATGAAAAAGGTTTTGAAGGACACTTCTTCTTTGCGTGTCTTGGGGTTTAAAAAACAAATTCTAGCTCTTGCTGTTTGCTT
TGGCGTTGGTCTAGGTACAATCAGCATTGCTGAAGCTGCGCCTTCTCGCAATGTTAATCCGCCTGCATTAAAAGTAAATG
CACCCAATGTTTATATTGTGAAAAAGGGCGATACACTTTGGGATATTTCAAAAAAATTCCTCAAAAACCCGTACCGCTGG
CGTGAAATTTGGGCAGGTAATAAACACGTTAAAAATCCACATTGGATTTTTCCTGGCGACCGTTTACTCATGTGTACCTA
TAACGGTAAGCCTTTAATTGGAAAAGATGAAGGTGATGGTTGTGATGGTATTATTCGTCGCTATGACAATCAAACCATCA
ACTTACAACCACAAGTTCGCGTAGAATCTTTAAACAATACTATTCCAGTCATTCCACTAGATAGCATTAAAAACTGGTTA
GAACGCTCAACTATTGTTCCTGTGAATTCTACCAAAAACATACCTTATGTTGTTGGTGCTAAAGATCAGCGAGTTCTAGC
CGCAAAAGGTCAGAATATTTATGTTCGTGGTAATGGCTTAGAAATAGGTCAGCGCTACAGCGTTTACCGTGAAAATGATC
CCTACATCATGCTTGATGCTAAAGGTAAAAAGTATAATGCAGGCTTAGAGCTTGTTGAGGTTGCATCTGGTATTGCAACA
AAGCAAGCTGGCGATATCACCACACTAGAAGTTACAGATTCTTATAATTCTGAAATTCGTCGTGGTTATTTCGTAATGCA
AGAATACGAAGCAATGTTACCAACACTATTTTATCCTGTGAATGCTGAAGAAGTGATTGCAGGCGGTAAAGTTATTCGTG
TTCAAGGCTCTATTGGCGCTGCGGCTGTTGGAAGTGTCGTTAGCCTTGACCGAGGTACAAACCAAGGTGTTAAAGTTGGA
CATGTTTTCAACGTAAATGAATTAGGTCAAACCATAAAAGACCAAGTTACAAATGAAACAATTCAGCTTCCTTCTGAAAA
TGTCGGTAGTGTTATGGTATTCAAAGCTTTTGACAACATTAGCTATGCTTATGTACTAGAAAGTTCACTGCCTATTAATG
TTGGTGCGGCACTTACACCACCTATTATGAATGACTAG

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

62.857

100

0.629