Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MZO21_RS00830 Genome accession   NZ_CP096120
Coordinates   178845..179435 (+) Length   196 a.a.
NCBI ID   WP_154772598.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 179743..180645 178845..179435 flank 308


Gene organization within MGE regions


Location: 178845..180645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS00830 (MZO21_00830) ssb 178845..179435 (+) 591 WP_154772598.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21761.62 Da        Isoelectric Point: 7.2007

>NTDB_id=679554 MZO21_RS00830 WP_154772598.1 178845..179435(+) (ssb) [Acinetobacter portensis strain JNE5]
MRGVNKVILVGTLGKDPETKTFQNGGSLTQFSIATSESWTDKTSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSANRQQQSGDQDGFAQPRFNNNNQGGGNNYGNQGGYGGQQTGGYNNQQQAP
QGNYGNNVNQGFQAPKPQPAKPMATAPSDLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=679554 MZO21_RS00830 WP_154772598.1 178845..179435(+) (ssb) [Acinetobacter portensis strain JNE5]
ATGCGCGGCGTAAATAAAGTAATCTTAGTTGGTACTTTGGGTAAAGACCCAGAAACAAAAACCTTTCAAAATGGTGGCTC
ACTTACTCAGTTTTCTATTGCAACAAGTGAATCTTGGACAGATAAAACATCTGGCGAACGTAAAGAACAAACTGAATGGC
ACCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCTCAGCAATATTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTGCGTACACGCCAATGGACTGATCAAAGTGGTCAAGAACGTTACACGACTGAAATTCGTGGCGAACAAATGCAAAT
GTTAGATTCTGCGAATCGTCAGCAACAAAGTGGCGATCAAGATGGTTTTGCTCAGCCACGTTTTAACAATAATAACCAAG
GTGGTGGTAATAACTACGGTAATCAAGGTGGTTATGGTGGTCAGCAAACTGGTGGATATAACAACCAACAGCAAGCACCT
CAAGGTAACTATGGCAACAATGTAAATCAAGGTTTCCAAGCGCCTAAGCCACAACCTGCTAAACCAATGGCAACAGCACC
TTCAGATTTAGATGATGATTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.289

100

0.531
  ssb Vibrio cholerae strain A1552

46.04

100

0.474
  ssb Neisseria meningitidis MC58

37.436

99.49

0.372
  ssb Neisseria gonorrhoeae MS11

37.436

99.49

0.372