Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG627_RS24330 Genome accession   NZ_CP109599
Coordinates   5537736..5538809 (+) Length   357 a.a.
NCBI ID   WP_329068458.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01429     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5532736..5543809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG627_RS24315 (OG627_24325) - 5534083..5535360 (+) 1278 WP_329068454.1 FAD-dependent oxidoreductase -
  OG627_RS24320 (OG627_24330) dnaG 5535430..5537334 (+) 1905 WP_329068456.1 DNA primase -
  OG627_RS24330 (OG627_24340) rpoS 5537736..5538809 (+) 1074 WP_329068458.1 RNA polymerase sigma factor Regulator
  OG627_RS24335 (OG627_24345) rcrQ 5538864..5540789 (-) 1926 WP_329068460.1 ABC transporter ATP-binding protein Regulator
  OG627_RS24340 (OG627_24350) rcrP 5540789..5542522 (-) 1734 WP_329068463.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 39905.65 Da        Isoelectric Point: 6.6728

>NTDB_id=679496 OG627_RS24330 WP_329068458.1 5537736..5538809(+) (rpoS) [Streptomyces sp. NBC_01429]
MRPAASVPPPYSPRTAAITQEVAPVQTQLLTERSVEVSLVPDPPGGRGGRSDAGGPSSDLFRQYLREIGRIPLLTAAEEV
ELARRVEAGLFAEEKLSGTPDPDSRLALDLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRA
VEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEHGREPTPEEVGAQLELDPARVR
EVLRLAQEPVSLHTPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEVVLSTLGERERKVVQLRYGLDDGRPRTLEE
IGRIFGVTRERIRQIESKTLGRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=679496 OG627_RS24330 WP_329068458.1 5537736..5538809(+) (rpoS) [Streptomyces sp. NBC_01429]
GTGCGGCCGGCCGCCTCCGTCCCGCCGCCGTACTCCCCCCGGACGGCAGCGATCACCCAGGAGGTCGCCCCCGTGCAGAC
CCAGTTGCTCACCGAGCGCTCCGTGGAGGTATCCCTCGTGCCCGACCCCCCGGGCGGGCGCGGCGGCCGTAGCGACGCCG
GCGGGCCCTCGTCCGATCTGTTCCGGCAGTATCTGCGGGAGATCGGCCGTATACCGTTGCTCACCGCCGCCGAGGAGGTG
GAGCTGGCCCGCCGCGTCGAGGCGGGGCTGTTCGCCGAGGAGAAGCTGAGCGGCACCCCCGACCCCGACTCGCGGCTCGC
CCTGGACCTCGACCGGCTGGTCGTGCTCGGCCGGATGGCCAAGCGACGGCTGATCGAGGCCAATCTGCGGCTCGTCGTCT
CGGTCGCCAAGCGCTATGTCGGCCGCGGTCTGACCATGCTCGATCTCGTACAGGAGGGAAACCTCGGCCTCATCAGGGCC
GTGGAGAAGTTCGACTACGCGCGCGGCTACAAGTTCTCTACGTACGCGACCTGGTGGATACGGCAGGCGATGTCCCGGGC
CCTGGCCGACCAGGCCCGTACGATCCGGGTCCCGGTCCATGTGGTCGAGCTGATCAACCGGGTCGTACGCGTGCAGCGCC
GGATGCTCCAGGAGCACGGCCGCGAGCCGACCCCCGAGGAGGTCGGCGCCCAGCTGGAGCTGGACCCCGCCCGGGTCAGG
GAGGTGCTGCGGCTCGCCCAGGAGCCCGTGTCCCTGCACACCCCGGTGGGGGAGGAGGACGATGTCGCCCTGGGGGACCT
GATCGAGGACGGCGACGCCGCGTCCCCCGTCGAATCCGCCGCCTTCCTGCTGCTGCGCGAGCACCTGGAAGTGGTGCTCT
CCACGCTCGGCGAGCGCGAACGCAAGGTGGTCCAGCTGCGTTACGGTCTCGACGACGGCCGGCCGCGCACCCTGGAGGAG
ATCGGAAGGATCTTCGGCGTGACCCGCGAACGGATACGCCAGATCGAGTCCAAGACCCTCGGCAGACTGCGCGACCACGC
CTTCGCCGACCAACTGCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(203-279)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(59-92)

Sigma-70 region 2 (Sigma70_r2)

(124-193)

Sigma-70, region 4 (Sigma70_r4)

(292-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.898

82.353

0.37