Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG627_RS24335 Genome accession   NZ_CP109599
Coordinates   5538864..5540789 (-) Length   641 a.a.
NCBI ID   WP_329068460.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01429     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5533864..5545789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG627_RS24315 (OG627_24325) - 5534083..5535360 (+) 1278 WP_329068454.1 FAD-dependent oxidoreductase -
  OG627_RS24320 (OG627_24330) dnaG 5535430..5537334 (+) 1905 WP_329068456.1 DNA primase -
  OG627_RS24330 (OG627_24340) rpoS 5537736..5538809 (+) 1074 WP_329068458.1 RNA polymerase sigma factor Regulator
  OG627_RS24335 (OG627_24345) rcrQ 5538864..5540789 (-) 1926 WP_329068460.1 ABC transporter ATP-binding protein Regulator
  OG627_RS24340 (OG627_24350) rcrP 5540789..5542522 (-) 1734 WP_329068463.1 ABC transporter ATP-binding protein Regulator
  OG627_RS24345 (OG627_24355) - 5542775..5544220 (-) 1446 WP_329068465.1 FGGY family carbohydrate kinase -
  OG627_RS24350 (OG627_24360) - 5544291..5544602 (-) 312 WP_329072933.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69058.31 Da        Isoelectric Point: 5.3044

>NTDB_id=679497 OG627_RS24335 WP_329068460.1 5538864..5540789(-) (rcrQ) [Streptomyces sp. NBC_01429]
MSGPGGRMMAAGPAARSMNFKESGKRLLRRLAVERATLGWMLGAGVLSVALSVVGPKILGNATDLIFAGVVGRQTTAGVT
KEQTVEALRAKGDGGLADLLSGVNFTPGQGIDFGAVGNVLLVALVVYVGAGLLMLVSTRLSIRVINRTVFRMREDVQAKL
SRLPLSYFDQQPRGEVLSRATNDVDNISQTLQQTMGQLVNSVLTIVGVLGMMFWISPLLALVALVTVPLSVFVAAKVGKR
SQPQFVQQWKVTGSLNAHIEEMYTGHALVKVFGRQEESAEGFREHNDKLYEAGFKAQFNSGIMQPLMLFISNLNYVLVAV
VGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDSEEQEADAPSIERLREPQGRVALEH
VSFRYDPEKPLIDDLSLCVDPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGLDISRMSREELRSGIGMVLQDTW
LFGGTIAENIAYGASREVTRADIEEAARAAHADRFVRTLPDGYDTVLDDEGSGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLAAEGAYARLYAAQFAQAVVEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=679497 OG627_RS24335 WP_329068460.1 5538864..5540789(-) (rcrQ) [Streptomyces sp. NBC_01429]
ATGAGCGGTCCTGGCGGACGCATGATGGCCGCGGGTCCCGCCGCGCGGTCGATGAACTTCAAGGAGTCGGGAAAACGGCT
GCTGCGGCGGCTCGCCGTGGAGCGGGCCACGCTGGGCTGGATGCTGGGGGCCGGAGTGCTGAGCGTCGCCCTGTCGGTCG
TCGGACCGAAGATACTCGGCAACGCGACGGACCTGATCTTCGCCGGGGTCGTCGGCCGGCAGACGACTGCGGGCGTCACC
AAGGAGCAGACCGTCGAGGCGCTGCGCGCCAAGGGCGACGGCGGACTCGCCGATCTGCTCTCCGGGGTGAATTTCACCCC
CGGCCAGGGCATCGACTTCGGCGCGGTGGGCAACGTCCTGCTGGTCGCGCTGGTGGTGTACGTGGGCGCGGGCCTGCTGA
TGCTGGTGTCGACGCGGCTGTCCATACGCGTGATCAACCGCACGGTGTTCCGGATGCGCGAGGACGTCCAGGCGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCAGCAGCCGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACGTGGACAACAT
CTCGCAGACCCTTCAGCAGACCATGGGCCAGCTGGTCAACTCGGTGCTGACGATCGTCGGTGTGCTGGGGATGATGTTCT
GGATCTCCCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTGTCGGTGTTCGTGGCGGCGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACCGGCTCGCTCAACGCCCATATCGAGGAGATGTACACCGGGCATGC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCCGAGGGCTTCCGCGAGCACAACGACAAGCTGTACGAGGCGGGTT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGCTCTTCATCTCCAATCTCAACTATGTGCTGGTCGCGGTC
GTCGGCGGGCTGCGGGTCGCCTCGGGGACGCTGTCGATCGGCGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCGTCGATGGCGAACCTCGTACAGTCCGGCGTCGCCTCCGCCGAGCGGATCTTCGAGCTGC
TGGACTCGGAGGAGCAGGAGGCCGACGCGCCGTCGATCGAGCGGCTGCGCGAGCCGCAGGGGCGGGTCGCCCTTGAGCAC
GTGTCGTTCCGGTACGACCCGGAGAAGCCGCTGATCGACGATCTGTCGCTCTGTGTGGACCCGGGCCAGACGGTCGCCAT
CGTCGGCCCGACGGGCGCGGGGAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGAGCGGCGGCCGGATCA
CCCTGGACGGCCTGGACATCTCGCGGATGTCGCGCGAGGAACTGCGGTCCGGGATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACGATCGCGGAGAACATCGCCTACGGCGCCTCCCGCGAGGTCACGCGCGCGGACATCGAGGAGGCGGC
GCGCGCGGCGCACGCCGACCGTTTCGTGCGTACGCTCCCGGACGGCTACGACACGGTGCTCGACGACGAGGGCTCGGGCG
TCAGCGCCGGGGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAGGCG
ACCAGCTCGGTGGACACGCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTGGCCCACGGACGTACGAGCTTCGT
CATCGCGCACCGGCTGTCCACGATCAGGGACGCCGATGTGATCCTGGTGATGGAGAGCGGCTCGATCGTCGAACAGGGCA
CGCACGAGGAGCTGTTGGCGGCGGAAGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGTGGAGGTG
GACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(46-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.87

96.256

0.384