Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   MZN68_RS02615 Genome accession   NZ_CP096117
Coordinates   520087..520686 (+) Length   199 a.a.
NCBI ID   WP_076612511.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DFS-1910310016     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515087..525686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN68_RS02590 (MZN68_02580) - 515388..515975 (-) 588 WP_002220670.1 superoxide dismutase -
  MZN68_RS02595 (MZN68_02585) dnaB 516137..517543 (+) 1407 WP_002213843.1 replicative DNA helicase -
  MZN68_RS02600 (MZN68_02590) pilH 517852..518529 (+) 678 WP_061701871.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  MZN68_RS02605 (MZN68_02595) pilV 518553..519173 (+) 621 WP_061725124.1 type IV pilus modification protein PilV Machinery gene
  MZN68_RS02610 (MZN68_02600) pilJ 519170..520108 (+) 939 WP_076612512.1 PilW family protein Machinery gene
  MZN68_RS02615 (MZN68_02605) pilK 520087..520686 (+) 600 WP_076612511.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MZN68_RS02620 (MZN68_02610) pilX 520691..521164 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  MZN68_RS02625 (MZN68_02615) - 522912..523340 (-) 429 Protein_511 AzlC family ABC transporter permease -
  MZN68_RS02630 (MZN68_02620) dut 523483..523935 (+) 453 WP_002220679.1 dUTP diphosphatase -
  MZN68_RS02635 (MZN68_02625) dapC 524011..525198 (+) 1188 WP_076612509.1 succinyldiaminopimelate transaminase -
  MZN68_RS02640 - 525286..525411 (+) 126 Protein_514 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21931.99 Da        Isoelectric Point: 8.4486

>NTDB_id=679497 MZN68_RS02615 WP_076612511.1 520087..520686(+) (pilK) [Neisseria meningitidis strain DFS-1910310016]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNMRTNTNNGNEEAFDNIVVQGKPTVEAVKRSCPAKSTGLCIDNKGMKYKKGTRSVSKMPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=679497 MZN68_RS02615 WP_076612511.1 520087..520686(+) (pilK) [Neisseria meningitidis strain DFS-1910310016]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATATGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAAT
CTACAGGCCTGTGCATTGACAATAAAGGGATGAAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.177

100

0.899