Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG627_RS24340 Genome accession   NZ_CP109599
Coordinates   5540789..5542522 (-) Length   577 a.a.
NCBI ID   WP_329068463.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01429     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5535789..5547522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG627_RS24330 (OG627_24340) rpoS 5537736..5538809 (+) 1074 WP_329068458.1 RNA polymerase sigma factor Regulator
  OG627_RS24335 (OG627_24345) rcrQ 5538864..5540789 (-) 1926 WP_329068460.1 ABC transporter ATP-binding protein Regulator
  OG627_RS24340 (OG627_24350) rcrP 5540789..5542522 (-) 1734 WP_329068463.1 ABC transporter ATP-binding protein Regulator
  OG627_RS24345 (OG627_24355) - 5542775..5544220 (-) 1446 WP_329068465.1 FGGY family carbohydrate kinase -
  OG627_RS24350 (OG627_24360) - 5544291..5544602 (-) 312 WP_329072933.1 YtxH domain-containing protein -
  OG627_RS24370 (OG627_24380) - 5545731..5546465 (-) 735 WP_329068467.1 NAD(P)-binding domain-containing protein -
  OG627_RS24375 (OG627_24385) - 5546572..5547165 (-) 594 WP_329068469.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62780.09 Da        Isoelectric Point: 6.5104

>NTDB_id=679498 OG627_RS24340 WP_329068463.1 5540789..5542522(-) (rcrP) [Streptomyces sp. NBC_01429]
MLLRLLRAHLAPYKRPIALLVTLQLLQTCATLYLPTLNADIIDNGVVKGDSGYILEFGGIMIAVSVVQVICNIGAVYYGA
RTASALGRDVRSAIFGRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGICVALIIRKMRPLFRLMQTRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNLSSLAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMALMMATFMFMMVPRAEVCAERIEEVLDTRSSVVP
PAKPVRELRRHGHLEIRGAEFRFPGAEEPVLREVSLVASPGETTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGVDVR
EVDPVLLARTVSMVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEGGLDAPVAQGGTNVSGGQRQRL
AIARTLVRRPEIYLFDDSFSALDYATDAALRAALSRETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGRHHELMASN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=679498 OG627_RS24340 WP_329068463.1 5540789..5542522(-) (rcrP) [Streptomyces sp. NBC_01429]
GTGCTCCTACGACTTCTGCGAGCCCATCTCGCTCCCTACAAAAGACCCATAGCCCTGCTGGTGACGCTCCAGCTGTTGCA
GACGTGCGCCACCCTGTATCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTGGTGAAGGGGGACTCGGGCTACA
TCCTGGAGTTCGGCGGGATCATGATCGCCGTCAGCGTGGTCCAGGTCATCTGCAACATCGGCGCCGTCTACTACGGCGCG
CGTACCGCCTCGGCCCTCGGCCGGGACGTGCGGTCCGCGATCTTCGGGCGGGTGCAGAGCTTCTCCGCCCGCGAGGTGGG
GCACTTCGGGGCCCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCCGCGCCCATCATGTGTGTCGGCGGCATCGTGATGGCCCTCGGCCAGGACGTCCCGCTCTCCGCGGTG
CTGCTGGCCGTTGTCCCGGTGCTGGGGATCTGCGTCGCCCTCATCATCAGGAAGATGCGCCCGCTGTTCCGGCTGATGCA
GACCCGGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCAGGGCCTTCGTCCGGGACG
ACTACGAGAAGGAACGCTTCCGCGGAGCCAATACCGAGCTGACCGATGTCGCGCTGTCGACCGGCCGGCTGATGGCACTG
ATGTTCCCCACCGTGATGACGGTGGTCAATCTGTCGTCGCTCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCCTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAAGAGGTGCTGGACACCAGGTCGAGTGTCGTACCG
CCCGCGAAGCCGGTGCGGGAGCTGCGGCGGCACGGGCATCTGGAGATACGGGGCGCCGAGTTCCGCTTCCCCGGGGCCGA
GGAGCCGGTGCTGCGCGAGGTGTCCCTCGTCGCGAGCCCCGGCGAGACGACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCCCGGCTGTTCGACGCCACGGACGGGCAGGTGCTGGTCGACGGGGTGGATGTGCGC
GAAGTCGATCCGGTGCTGCTGGCGAGGACCGTGAGCATGGTGCCCCAGAAGCCGTATCTGTTCTCCGGTACGGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGGGCGGGCTCGACGCGCCCGTCGCCCAGGGCGGCACGAATGTCTCCGGCGGGCAGCGCCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCGGCGGCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCCACGGA
CGCCGCGCTGCGTGCCGCGCTGTCGCGGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTCTCCACGATCC
GTGACGCCGACCGGATCCTGGTCCTGGACGAGGGCCGGGTCGTCGGGTCGGGCCGCCATCACGAACTGATGGCATCGAAT
GAGACATACCGGGAGATAGTCCTCTCCCAGCTGACCGAGGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.958

99.133

0.416