Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MZN67_RS01890 Genome accession   NZ_CP096116
Coordinates   419894..420373 (-) Length   159 a.a.
NCBI ID   WP_015444870.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 414894..425373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS01850 (MZN67_01820) rplO 415026..415460 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  MZN67_RS01855 (MZN67_01825) secY 415463..416791 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  MZN67_RS01860 (MZN67_01830) rpmJ 416808..416921 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  MZN67_RS01865 (MZN67_01835) rpsM 416999..417355 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  MZN67_RS01870 (MZN67_01840) rpsK 417379..417777 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  MZN67_RS01875 (MZN67_01845) rpsD 417794..418414 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  MZN67_RS01880 (MZN67_01850) - 418433..419425 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  MZN67_RS01885 (MZN67_01855) rplQ 419444..419827 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  MZN67_RS01890 (MZN67_01860) ssb 419894..420373 (-) 480 WP_015444870.1 single-stranded DNA-binding protein Machinery gene
  MZN67_RS01895 (MZN67_01865) - 420455..421822 (-) 1368 WP_318793960.1 MFS transporter -
  MZN67_RS01900 (MZN67_01870) fabL 421984..422742 (+) 759 WP_010946107.1 enoyl-[acyl-carrier-protein] reductase FabL -
  MZN67_RS01905 (MZN67_01875) - 422813..423226 (+) 414 WP_027264841.1 acyl carrier protein -
  MZN67_RS01910 (MZN67_01880) - 423226..424122 (+) 897 WP_027264840.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17643.40 Da        Isoelectric Point: 4.6616

>NTDB_id=679442 MZN67_RS01890 WP_015444870.1 419894..420373(-) (ssb) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=679442 MZN67_RS01890 WP_015444870.1 419894..420373(-) (ssb) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCTACTAATTACGACGACATGCCTTCATTTCAGGGAACCTCAACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.143

100

0.541
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434