Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M0D62_RS01810 Genome accession   NZ_CP096114
Coordinates   381929..382432 (+) Length   167 a.a.
NCBI ID   WP_047436700.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 376929..387432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS01780 (M0D62_01775) - 377877..378722 (+) 846 WP_047436691.1 ParB/RepB/Spo0J family partition protein -
  M0D62_RS01785 (M0D62_01780) - 378868..379749 (+) 882 WP_047436694.1 mechanosensitive ion channel family protein -
  M0D62_RS01790 (M0D62_01785) - 379779..379982 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  M0D62_RS01795 (M0D62_01790) ychF 379994..381091 (+) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  M0D62_RS01800 (M0D62_01795) - 381177..381368 (-) 192 WP_047436696.1 hypothetical protein -
  M0D62_RS01805 (M0D62_01800) rpsF 381612..381908 (+) 297 WP_001261459.1 30S ribosomal protein S6 -
  M0D62_RS01810 (M0D62_01805) ssbA 381929..382432 (+) 504 WP_047436700.1 single-stranded DNA-binding protein Machinery gene
  M0D62_RS01815 (M0D62_01810) rpsR 382484..382726 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  M0D62_RS01820 (M0D62_01815) - 382962..383969 (-) 1008 WP_047436703.1 Abi family protein -
  M0D62_RS01825 (M0D62_01820) - 383975..384410 (-) 436 Protein_331 site-specific integrase -
  M0D62_RS01830 (M0D62_01825) - 384616..385227 (+) 612 WP_047436706.1 toxin -
  M0D62_RS01835 (M0D62_01830) - 385599..385967 (+) 369 WP_047436709.1 YxeA family protein -
  M0D62_RS01840 (M0D62_01835) - 386148..386720 (+) 573 WP_047436712.1 PepSY domain-containing protein -
  M0D62_RS01845 (M0D62_01840) - 386856..387119 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18565.20 Da        Isoelectric Point: 4.7305

>NTDB_id=679394 M0D62_RS01810 WP_047436700.1 381929..382432(+) (ssbA) [Staphylococcus argenteus strain MRSA-139-14-168]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNLYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=679394 M0D62_RS01810 WP_047436700.1 381929..382432(+) (ssbA) [Staphylococcus argenteus strain MRSA-139-14-168]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACATTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTTGTATAATAACTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365