Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MZV50_RS12985 Genome accession   NZ_CP096040
Coordinates   2736748..2737254 (+) Length   168 a.a.
NCBI ID   WP_252635074.1    Uniprot ID   -
Organism   Caulobacter segnis strain RL271     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2731748..2742254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZV50_RS12965 (MZV50_12960) pseH 2731923..2732477 (+) 555 WP_252635070.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  MZV50_RS12970 (MZV50_12965) - 2732557..2735421 (+) 2865 WP_252635071.1 hypothetical protein -
  MZV50_RS12975 (MZV50_12970) - 2735479..2736168 (+) 690 WP_252635072.1 hypothetical protein -
  MZV50_RS12980 (MZV50_12975) - 2736187..2736588 (+) 402 WP_252635073.1 hypothetical protein -
  MZV50_RS12985 (MZV50_12980) ssb 2736748..2737254 (+) 507 WP_252635074.1 single-stranded DNA-binding protein Machinery gene
  MZV50_RS12990 (MZV50_12985) - 2737467..2738009 (-) 543 WP_252635075.1 GNAT family N-acetyltransferase -
  MZV50_RS12995 (MZV50_12990) ppdK 2738323..2741010 (+) 2688 WP_252635076.1 pyruvate, phosphate dikinase -
  MZV50_RS13000 (MZV50_12995) - 2741100..2741768 (+) 669 WP_252635077.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18052.83 Da        Isoelectric Point: 5.3415

>NTDB_id=679341 MZV50_RS12985 WP_252635074.1 2736748..2737254(+) (ssb) [Caulobacter segnis strain RL271]
MAGSVNKVILVGNLGADPEIRSLGSGDRVANLRLATSETWRDRNSGERKEKTEWHRVVIFNDNLVKVAEQYLRKGSTVYI
EGAIQTRKWTDNTGVEKYSTEIVLQKFRGELTMLGGRSDNAGASSGGGDEYGGGYSGGGGSSFGGGQRSQPSGPRESFSA
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=679341 MZV50_RS12985 WP_252635074.1 2736748..2737254(+) (ssb) [Caulobacter segnis strain RL271]
ATGGCTGGCAGCGTCAACAAGGTCATTCTGGTGGGCAATCTCGGGGCCGATCCCGAGATCCGCAGCCTGGGTTCGGGCGA
CCGCGTCGCCAATCTCCGCCTCGCCACGTCCGAGACCTGGCGCGACCGCAACAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGTGTCGTGATCTTCAACGACAACCTGGTGAAGGTCGCCGAGCAGTACCTGCGCAAGGGCTCGACCGTCTACATC
GAGGGCGCGATCCAGACCCGCAAGTGGACCGACAACACGGGCGTCGAGAAGTACTCGACCGAGATCGTGCTGCAGAAGTT
CCGCGGCGAACTGACCATGCTGGGCGGTCGCAGCGACAACGCTGGCGCCTCCTCGGGTGGCGGTGACGAATACGGCGGCG
GCTATTCGGGCGGCGGCGGCTCCAGCTTCGGCGGCGGCCAGCGCAGCCAGCCCAGCGGCCCCCGCGAGAGCTTCTCGGCC
GACCTGGACGACGAAATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.263

100

0.512
  ssb Vibrio cholerae strain A1552

49.425

100

0.512
  ssb Neisseria meningitidis MC58

40.957

100

0.458
  ssb Neisseria gonorrhoeae MS11

41.304

100

0.452