Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LAB08_RS26245 Genome accession   NZ_AP017423
Coordinates   5872214..5873545 (+) Length   443 a.a.
NCBI ID   WP_096515094.1    Uniprot ID   -
Organism   Pseudomonas izuensis strain LAB-08     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5867214..5878545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAB08_RS26220 (LAB08_R52460) pgeF 5867404..5868129 (-) 726 WP_096515102.1 peptidoglycan editing factor PgeF -
  LAB08_RS26225 (LAB08_R52470) rluD 5868126..5869088 (-) 963 WP_007990414.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LAB08_RS26230 (LAB08_R52480) - 5869240..5870262 (+) 1023 WP_096515100.1 outer membrane protein assembly factor BamD -
  LAB08_RS26235 (LAB08_R52490) - 5870399..5870632 (+) 234 WP_096515098.1 PP0621 family protein -
  LAB08_RS26240 (LAB08_R52500) pilS 5870622..5872211 (+) 1590 WP_096515096.1 ATP-binding protein Regulator
  LAB08_RS26245 (LAB08_R52510) pilR 5872214..5873545 (+) 1332 WP_096515094.1 sigma-54 dependent transcriptional regulator Regulator
  LAB08_RS26250 (LAB08_R52520) thiO 5873656..5874756 (-) 1101 WP_096515092.1 glycine oxidase ThiO -
  LAB08_RS26255 (LAB08_R52530) - 5874814..5875215 (-) 402 WP_096515090.1 type IV pilin protein -
  LAB08_RS26260 (LAB08_R52540) - 5875230..5878313 (-) 3084 WP_096515088.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49629.16 Da        Isoelectric Point: 6.9630

>NTDB_id=67927 LAB08_RS26245 WP_096515094.1 5872214..5873545(+) (pilR) [Pseudomonas izuensis strain LAB-08]
MSPRPKVLIVDDEPDIRELLEITLGRMKLDTWSARNAGEAQALLRRETFDLCLTDMRLPDGTGLELVQHIQQRYPQVPVA
MITAYGNVDTAINALKAGAFDFLTKPVDLPRLRELVTSALLLPAPDAAIDRRLLGDSLPMRNLRKQIDKLARSQAPVYIS
GESGSGKELVARLIHDRGPRANHPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLP
MQVKLLRAIQEKAVRSVGGQQEMVVDVRILCATHKDLAAEITAERFRQDLYYRLNVIELRVPPLRERRDDIEPLASHMLK
RLAANTGQPLAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCAAEGGVPDLTQIDNLEAYL
ENVERQLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=67927 LAB08_RS26245 WP_096515094.1 5872214..5873545(+) (pilR) [Pseudomonas izuensis strain LAB-08]
ATGAGCCCACGGCCTAAAGTCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGGGCGGAT
GAAGCTCGATACCTGGAGTGCCCGCAACGCTGGCGAGGCCCAAGCCCTGCTGAGGCGCGAGACGTTCGATCTGTGCCTGA
CCGACATGCGTCTGCCGGACGGCACGGGCCTTGAGTTGGTACAGCATATCCAGCAACGCTATCCGCAGGTTCCGGTGGCC
ATGATCACGGCCTATGGCAATGTCGATACAGCAATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACAAAACCGGT
TGACCTCCCCCGACTGCGCGAACTGGTCACCAGCGCCCTGCTGCTGCCCGCCCCCGACGCTGCCATCGATCGCCGCCTGC
TGGGCGATTCATTGCCCATGCGCAACCTGCGCAAACAAATCGATAAACTGGCGCGCAGCCAGGCCCCGGTCTACATCAGC
GGCGAGTCCGGCAGCGGCAAGGAGCTGGTCGCACGCCTGATCCATGACCGCGGACCACGCGCCAACCACCCCTTTATTCC
GGTCAATTGCGGGGCCATTCCCTCGGAACTGATGGAAAGCGAGTTCTTTGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGACTGTTCCAGGCGGCCCATGGTGGCACCCTGTTCCTTGATGAAGTGGCGGACCTGCCGCTGCCG
ATGCAGGTCAAACTGCTTCGAGCCATCCAGGAAAAGGCCGTGCGCAGCGTCGGCGGGCAACAGGAAATGGTGGTTGATGT
GCGCATTCTTTGCGCCACCCACAAAGACCTTGCGGCCGAAATCACCGCCGAGCGCTTTCGCCAGGACTTGTACTACCGGT
TGAATGTCATCGAGCTGCGGGTTCCGCCCTTGCGTGAACGCCGCGATGACATCGAGCCGCTGGCCAGCCATATGCTCAAG
CGTCTTGCCGCCAACACCGGGCAACCGCTGGCGAAGCTCCACCCGCAAGCCCTCGACGCCCTCAAAAGCTATCGCTTCCC
GGGCAACGTTCGGGAACTGGAGAACATGCTCGAACGGGCGCACACGTTATGCGAGAACAAACAGATCGAAGCCAGCGACC
TGCGCCTGGCCGAAGGTAACTGTGCCGCCGAAGGGGGTGTGCCGGACCTGACGCAGATCGACAATCTGGAGGCTTACCTG
GAGAACGTCGAACGCCAGTTGATTCTGCAGGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCGATTGAA
TTTGTCGTTTCGGTCGATGCGCTACAGACTCAAGAAATTGGGGCTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

100

0.781
  pilR Acinetobacter baumannii strain A118

49.46

100

0.517
  luxO Vibrio cholerae strain A1552

36.569

100

0.366

Multiple sequence alignment