Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LAB08_RS26240 Genome accession   NZ_AP017423
Coordinates   5870622..5872211 (+) Length   529 a.a.
NCBI ID   WP_096515096.1    Uniprot ID   -
Organism   Pseudomonas izuensis strain LAB-08     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5865622..5877211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAB08_RS26220 (LAB08_R52460) pgeF 5867404..5868129 (-) 726 WP_096515102.1 peptidoglycan editing factor PgeF -
  LAB08_RS26225 (LAB08_R52470) rluD 5868126..5869088 (-) 963 WP_007990414.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LAB08_RS26230 (LAB08_R52480) - 5869240..5870262 (+) 1023 WP_096515100.1 outer membrane protein assembly factor BamD -
  LAB08_RS26235 (LAB08_R52490) - 5870399..5870632 (+) 234 WP_096515098.1 PP0621 family protein -
  LAB08_RS26240 (LAB08_R52500) pilS 5870622..5872211 (+) 1590 WP_096515096.1 ATP-binding protein Regulator
  LAB08_RS26245 (LAB08_R52510) pilR 5872214..5873545 (+) 1332 WP_096515094.1 sigma-54 dependent transcriptional regulator Regulator
  LAB08_RS26250 (LAB08_R52520) thiO 5873656..5874756 (-) 1101 WP_096515092.1 glycine oxidase ThiO -
  LAB08_RS26255 (LAB08_R52530) - 5874814..5875215 (-) 402 WP_096515090.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58622.60 Da        Isoelectric Point: 6.9934

>NTDB_id=67926 LAB08_RS26240 WP_096515096.1 5870622..5872211(+) (pilS) [Pseudomonas izuensis strain LAB-08]
MIAETSSHGGKQAQRLLRLYHLYRLSVGIILVLLISSDMDNRLLTSANDDLLRSGSWLYLVLNILLVVFFENTRHPAQLF
SLALLDVLLLCGLLYAGGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAVGALGIVGTSFLLHFSHPSSPNDYLQAGTLG
ALCFAAALLVQGLIRRLEVSETLAEQKASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSALSLLGCGRLEGCLID
DHVPVLVERLHLWLSNPTLRPQSLKVAYSGMELQPSFIALDSSSQHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNGADQRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLQQFVTEIREGANER
QQIHLHIAPGDFKTLMDPNQLNQILDNLIRNAWRHSAQSHDRAQVWLELFIDPDSQLPILEILDDGAGVLPDHQAQLFEP
FFTTSYQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQG

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=67926 LAB08_RS26240 WP_096515096.1 5870622..5872211(+) (pilS) [Pseudomonas izuensis strain LAB-08]
GTGATCGCTGAGACGTCCAGTCACGGCGGCAAACAGGCCCAGCGACTGCTGCGCCTTTATCATCTCTACCGATTAAGCGT
CGGCATCATCCTGGTGCTGCTGATTTCCAGCGATATGGACAACCGGTTGCTGACGTCAGCCAATGACGATCTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTGCTGAATATTCTTCTGGTGGTCTTTTTCGAGAACACGCGCCACCCGGCGCAACTGTTC
AGCCTGGCGCTTCTCGACGTCCTGCTGCTGTGCGGCCTGCTCTACGCCGGCGGCGGCGTGGCCAGCGCCATAGGCAACCT
GTTGATCGTCTCGGTGGCCATTAGCAATACGTTGTTGCGAAGGCGTATTGGCCTGCTGATTGCCGCCGTCGGCGCACTCG
GCATCGTCGGTACGAGTTTCCTGTTGCACTTCAGCCATCCCTCCAGCCCCAATGATTATTTGCAGGCGGGCACCCTCGGC
GCCCTGTGTTTTGCCGCGGCACTGTTGGTGCAAGGCCTGATCCGACGCCTGGAAGTCAGCGAAACCCTGGCGGAGCAAAA
GGCCAGTGAAGTCGTCGGCCTGGAGGCGCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGTATCCTGGTACTCGACG
AGCAGCGGCGCGTGCAATTGGCCAACCACAGCGCCCTGTCACTGCTCGGTTGCGGCCGCCTCGAAGGCTGTCTGATCGAT
GACCATGTCCCCGTCCTTGTCGAACGCCTGCACCTGTGGCTCAGCAATCCAACGCTGCGCCCGCAAAGTCTGAAAGTCGC
CTATAGCGGCATGGAGCTGCAGCCGAGCTTCATTGCGCTGGACTCCAGTTCGCAGCACCAGACCCTGGTCTTTCTTGAAG
ACCTCGCACAGATTGCCCAGCAGGCTCAACAGCTGAAACTTGCCGCCCTCGGGCGCCTGACCGCCGGTATCGCCCATGAA
ATCCGCAACCCGTTGGGCGCAATCAGTCATGCCGCACAGCTATTGCGCGAATCCGAGGAACTGAACGGCGCGGATCAACG
TCTGACGCAGATCATTCAAGACCACTCTCAGCGAATGAACCGGGTAATCGAAAACGTCCTGCAACTGTCTCGCCGCCAGC
AAACCGTGCCACAAAGGCTGGACCTGAAGCCGTGGCTGCAACAGTTCGTCACCGAAATCCGCGAGGGCGCGAACGAGCGC
CAGCAGATTCACCTGCACATCGCTCCCGGTGACTTCAAGACCCTTATGGACCCGAACCAGTTGAACCAGATTCTCGACAA
TCTGATACGCAATGCCTGGCGCCACAGCGCCCAGAGCCACGATCGGGCGCAGGTCTGGCTTGAGTTGTTTATCGATCCCG
ATAGTCAATTGCCAATCCTGGAAATCCTCGACGACGGCGCCGGCGTGCTCCCCGATCATCAAGCGCAACTGTTCGAGCCG
TTCTTCACCACCAGTTACCAGGGCACTGGCCTGGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAGGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.038

99.811

0.599

Multiple sequence alignment