Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MY523_RS20685 Genome accession   NZ_CP096016
Coordinates   4571696..4572313 (+) Length   205 a.a.
NCBI ID   WP_250656564.1    Uniprot ID   -
Organism   Alkalimarinus coralli strain SCSIO 12582     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4566696..4577313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY523_RS20675 uvrA 4567092..4569932 (-) 2841 WP_250656562.1 excinuclease ABC subunit UvrA -
  MY523_RS20680 - 4570097..4571461 (+) 1365 WP_250656563.1 MFS transporter -
  MY523_RS20685 ssb 4571696..4572313 (+) 618 WP_250656564.1 single-stranded DNA-binding protein Machinery gene
  MY523_RS20690 - 4572434..4573291 (-) 858 WP_250656565.1 tetratricopeptide repeat protein -
  MY523_RS20695 - 4573276..4574718 (-) 1443 WP_250656566.1 aspartate kinase -
  MY523_RS20700 - 4574791..4575177 (-) 387 WP_250656567.1 ectoine synthase -
  MY523_RS20705 - 4575219..4575671 (-) 453 WP_250656568.1 hypothetical protein -
  MY523_RS20710 ectB 4575713..4577020 (-) 1308 WP_250656569.1 diaminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22553.76 Da        Isoelectric Point: 6.6463

>NTDB_id=679152 MY523_RS20685 WP_250656564.1 4571696..4572313(+) (ssb) [Alkalimarinus coralli strain SCSIO 12582]
MARGINKVILIGNLGNDPDTRYTPQGSAITNLSVATDESYKDKNTGQMVPKTEWHRVVLFNRLAEIAKEYLKKGSKVYLE
GRLQTRKWQDQGGQDRYTTEIVANEMQMLDSRGGADQSQGGYSAPAQHQHQQQQGGYAQQPQSAPQHQAAPQQRAAQPQS
VPQQPAAPQQGYQQPQQGGYGQQAPNHAAPSAPAPMDDFDDDIPF

Nucleotide


Download         Length: 618 bp        

>NTDB_id=679152 MY523_RS20685 WP_250656564.1 4571696..4572313(+) (ssb) [Alkalimarinus coralli strain SCSIO 12582]
ATGGCACGCGGTATTAACAAAGTAATTCTAATTGGTAATCTGGGAAATGACCCCGACACTCGTTACACTCCCCAGGGAAG
CGCAATCACGAACTTAAGTGTTGCTACTGATGAGAGTTACAAAGATAAAAATACAGGGCAAATGGTGCCAAAAACTGAAT
GGCACCGTGTCGTTCTGTTTAACCGGTTAGCTGAGATTGCAAAAGAGTACTTAAAGAAAGGCTCAAAGGTTTATCTTGAA
GGGCGATTGCAGACTAGAAAGTGGCAGGATCAGGGCGGTCAAGACCGTTATACCACAGAGATTGTTGCCAATGAGATGCA
GATGCTCGACTCCCGCGGTGGTGCAGATCAGTCTCAGGGTGGTTACTCTGCTCCTGCTCAACACCAGCATCAGCAACAGC
AGGGCGGGTATGCTCAGCAGCCTCAGAGTGCGCCACAGCATCAAGCGGCACCGCAACAACGTGCAGCACAGCCCCAGTCT
GTGCCTCAGCAGCCAGCAGCTCCCCAGCAAGGCTATCAGCAACCGCAGCAGGGTGGGTATGGACAACAAGCGCCTAATCA
TGCCGCGCCTTCAGCGCCAGCTCCAATGGATGACTTTGACGATGATATACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.952

100

0.522
  ssb Glaesserella parasuis strain SC1401

49.275

100

0.498
  ssb Neisseria meningitidis MC58

45.274

98.049

0.444
  ssb Neisseria gonorrhoeae MS11

45.274

98.049

0.444