Detailed information NTG0067913

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LAB08_RS06800
• Genome accession: NZ_AP017423
• Coordinates: 1502354..1504576 (+)
• Length: 740 a.a.
• NCBI ID: WP_096512933.1
• Uniprot ID: -
• Organism: Pseudomonas izuensis strain LAB-08
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1497354..1509576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAB08_RS06775 (LAB08_R13520)	-	1498366..1499025 (+)	660	WP_096512938.1	transglutaminase family protein	-
LAB08_RS06780 (LAB08_R13530)	-	1499069..1499692 (+)	624	WP_096512937.1	glutathione S-transferase	-
LAB08_RS06785 (LAB08_R13540)	-	1499826..1500758 (+)	933	WP_096512936.1	ABC transporter ATP-binding protein	-
LAB08_RS06790 (LAB08_R13550)	-	1500755..1501534 (+)	780	WP_096512935.1	ABC transporter permease	-
LAB08_RS06795 (LAB08_R13560)	-	1501702..1502217 (-)	516	WP_096512934.1	DUF2062 domain-containing protein	-
LAB08_RS06800 (LAB08_R13570)	comA	1502354..1504576 (+)	2223	WP_096512933.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LAB08_RS06805 (LAB08_R13580)	exbB	1504675..1505310 (+)	636	WP_172901686.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LAB08_RS06810 (LAB08_R13590)	-	1505307..1505735 (+)	429	WP_096512932.1	biopolymer transporter ExbD	-
LAB08_RS06815 (LAB08_R13600)	lpxK	1505735..1506745 (+)	1011	WP_096512931.1	tetraacyldisaccharide 4'-kinase	-
LAB08_RS06820 (LAB08_R13610)	-	1506771..1506956 (+)	186	WP_007945752.1	Trm112 family protein	-
LAB08_RS06825 (LAB08_R13620)	kdsB	1506953..1507717 (+)	765	WP_096512930.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LAB08_RS06830 (LAB08_R13630)	-	1507717..1508181 (+)	465	WP_096512929.1	low molecular weight protein-tyrosine-phosphatase	-
LAB08_RS06835 (LAB08_R13640)	murB	1508178..1509197 (+)	1020	WP_096512928.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 81120.15 Da
• Isoelectric Point: 10.3645

>NTDB_id=67913 LAB08_RS06800 WP_096512933.1 1502354..1504576(+) (comA) [Pseudomonas izuensis strain LAB-08]
MRTGMVALALGLLALRFLPALPSVGWWLLMPVAGLMLLPFRTYPVAFFLFGLSWACAQAQWALDDRLPSSLDGETRWIEG
RVTGLPQHGEAVVRFELADARSRHAKVPRLMRLAWYDGPPVNSGERWRLAVKLKRPAGLLNPHAFDHEAWLLARRIGATG
SVKGGERLSEARWAWRDGIRQKLQTVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPNRLPWLPWACGLAFMAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLQPGFWLSFGAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAVGLGPLLLVLGLPISLSGPLVNLLAVPWISMLVLPPAL
LGTLLLPVPYVGDGLLWLAGGMLDWLFKGLTVMAGQIPAWVPVAVPWWAWSLGALGAILLLLPQGVPLRPLGWPLLLVLV
FPPRPTLPDGMAEIWQLDVGQGLAILVRTRHHALLYDAGPRVGDNDLGERVVLPTLRKLGVDGLDLMLISHAHADHAGGA
RAVAKGLPVKRVISGEPGELPTELQAGDCESSRQWTWDGVNFELWRWADARESNPKSCVLQIEANGERLLLTGDIDTAAE
RALLDSPLAVATDWLQSPHHGSRSSSSAVLLATLQPKAVLISRGQGNSFGHPHPSVIARYRARGMAIHDSAEQGAIRLQL
GNFKPPWSMRQEPRFWRSAK

Nucleotide

• Length: 2223 bp

>NTDB_id=67913 LAB08_RS06800 WP_096512933.1 1502354..1504576(+) (comA) [Pseudomonas izuensis strain LAB-08]
ATGCGCACAGGGATGGTGGCGTTGGCGCTGGGTTTGCTGGCCCTGCGTTTTTTACCGGCGTTGCCGTCGGTCGGGTGGTG
GCTGTTGATGCCGGTGGCGGGTTTGATGTTGCTGCCGTTCAGGACGTATCCGGTGGCGTTTTTCCTGTTCGGTTTGAGCT
GGGCCTGTGCGCAGGCGCAATGGGCGCTGGATGATCGATTGCCGTCGAGTCTGGATGGCGAAACGCGCTGGATTGAAGGG
CGGGTAACGGGATTGCCCCAGCACGGCGAGGCCGTCGTGCGATTCGAATTGGCCGATGCCCGGTCACGACACGCAAAGGT
GCCGCGGCTCATGCGCCTGGCCTGGTACGACGGGCCGCCGGTGAACAGCGGTGAACGCTGGCGACTGGCGGTCAAGTTGA
AGCGTCCTGCCGGTTTGCTCAATCCGCATGCCTTCGATCACGAGGCCTGGCTGCTGGCGCGTCGTATCGGCGCGACCGGG
AGTGTCAAGGGCGGCGAGCGACTTTCCGAGGCACGATGGGCCTGGCGTGACGGTATTCGTCAGAAGTTGCAGACCGTGGA
TGCCCAGGGTCGAACCGGCGCGCTGACGGCATTGGTGCTGGGGGATGGTGCCGGGCTCAGTCGCGAAGACTGGCAAGTGT
TGCAGGACACCGGAACCGTGCACCTGTTGGTGATTTCCGGGCAACACATCGGGTTGCTGGCGGGGCTGGTGTATTTGCTG
ATTGCCGGGCTTGCCCGTTATGGCCTGTGGCCAAACCGCCTGCCGTGGCTGCCCTGGGCCTGCGGTCTGGCATTCATGGC
GGCCTTGGGGTATGGGCTGTTGGCCGGCTTCGAGGTGCCGGTGCGCCGTGCCTGCCTGATGATCGGCCTGGTGCTGTTGT
GGCGTCTGCGATTTCGCCACCTCGGTGCCTGGTGGCCGCTGTTGCTGGCATTCAACGGCGTTTTGCTACTGGACCCGCTG
GCCAGTCTGCAACCGGGATTCTGGTTGTCCTTCGGGGCGGTGGCGGTGCTGATCTTTACCTTCGGCGGTCGCCTGGGGCC
CTGGCGATGGTGGCAAACCTGGACCCGCGCCCAATGGTTGATCGCCGTGGGCCTGGGTCCGTTATTGCTGGTGCTGGGGT
TGCCGATCAGTCTCAGCGGGCCGCTGGTCAATCTGCTGGCGGTGCCCTGGATCAGCATGCTGGTACTGCCACCTGCCTTG
CTCGGGACCCTGCTGTTGCCCGTGCCTTATGTGGGGGACGGGCTGCTGTGGCTAGCCGGCGGAATGCTCGACTGGCTCTT
CAAGGGGCTGACGGTGATGGCCGGGCAGATTCCCGCGTGGGTGCCCGTGGCGGTTCCCTGGTGGGCATGGAGCCTGGGGG
CACTCGGCGCGATCCTGCTTTTGCTGCCCCAAGGCGTGCCGCTACGGCCCTTGGGTTGGCCTTTGCTGCTGGTGCTGGTT
TTTCCGCCCCGACCCACACTGCCTGACGGCATGGCCGAAATCTGGCAGCTGGATGTGGGGCAGGGGCTGGCCATCCTGGT
GCGCACTCGCCATCACGCGCTGCTCTATGACGCCGGGCCGCGTGTTGGCGATAACGATCTCGGTGAGCGTGTAGTACTGC
CGACGTTGCGCAAACTGGGCGTGGACGGTCTTGACCTGATGCTGATCAGTCACGCCCACGCCGATCATGCCGGCGGGGCG
CGGGCGGTCGCCAAGGGACTGCCGGTGAAGCGTGTCATCAGTGGCGAACCCGGGGAGCTGCCGACGGAACTGCAAGCCGG
GGACTGCGAGTCCAGCCGGCAATGGACGTGGGACGGTGTGAACTTTGAACTCTGGCGATGGGCGGATGCCCGGGAAAGCA
ATCCAAAATCCTGCGTGCTGCAGATTGAAGCCAATGGCGAGCGATTGCTGCTGACCGGCGACATCGACACGGCGGCCGAA
CGAGCGCTGCTCGACAGTCCGTTGGCCGTGGCCACCGACTGGTTGCAATCGCCGCACCACGGCAGCCGCAGTTCGTCGTC
CGCAGTGTTGCTCGCCACGTTGCAACCCAAGGCGGTGCTGATCTCCCGTGGCCAGGGCAATTCCTTCGGCCATCCCCATC
CCTCCGTTATTGCACGCTATCGGGCCCGGGGCATGGCGATCCATGACAGCGCCGAACAGGGCGCCATCCGTCTGCAACTG
GGGAACTTCAAACCGCCGTGGTCAATGCGTCAAGAACCGCGTTTCTGGCGCTCCGCGAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-461)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.117	97.162	0.623
comA	Ralstonia pseudosolanacearum GMI1000	34.749	100	0.365