Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LAB08_RS06805 Genome accession   NZ_AP017423
Coordinates   1504675..1505310 (+) Length   211 a.a.
NCBI ID   WP_172901686.1    Uniprot ID   -
Organism   Pseudomonas izuensis strain LAB-08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499675..1510310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAB08_RS06785 (LAB08_R13540) - 1499826..1500758 (+) 933 WP_096512936.1 ABC transporter ATP-binding protein -
  LAB08_RS06790 (LAB08_R13550) - 1500755..1501534 (+) 780 WP_096512935.1 ABC transporter permease -
  LAB08_RS06795 (LAB08_R13560) - 1501702..1502217 (-) 516 WP_096512934.1 DUF2062 domain-containing protein -
  LAB08_RS06800 (LAB08_R13570) comA 1502354..1504576 (+) 2223 WP_096512933.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LAB08_RS06805 (LAB08_R13580) exbB 1504675..1505310 (+) 636 WP_172901686.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LAB08_RS06810 (LAB08_R13590) - 1505307..1505735 (+) 429 WP_096512932.1 biopolymer transporter ExbD -
  LAB08_RS06815 (LAB08_R13600) lpxK 1505735..1506745 (+) 1011 WP_096512931.1 tetraacyldisaccharide 4'-kinase -
  LAB08_RS06820 (LAB08_R13610) - 1506771..1506956 (+) 186 WP_007945752.1 Trm112 family protein -
  LAB08_RS06825 (LAB08_R13620) kdsB 1506953..1507717 (+) 765 WP_096512930.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LAB08_RS06830 (LAB08_R13630) - 1507717..1508181 (+) 465 WP_096512929.1 low molecular weight protein-tyrosine-phosphatase -
  LAB08_RS06835 (LAB08_R13640) murB 1508178..1509197 (+) 1020 WP_096512928.1 UDP-N-acetylmuramate dehydrogenase -
  LAB08_RS06840 (LAB08_R13650) - 1509441..1509911 (+) 471 WP_096512927.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22999.19 Da        Isoelectric Point: 7.3618

>NTDB_id=67914 LAB08_RS06805 WP_172901686.1 1504675..1505310(+) (exbB) [Pseudomonas izuensis strain LAB-08]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKKLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=67914 LAB08_RS06805 WP_172901686.1 1504675..1505310(+) (exbB) [Pseudomonas izuensis strain LAB-08]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCGGCAATGGCGATCGTTGC
CGAGCGCCTCTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCACTTGCTGGGTCAGGTCTGGGTGTGGATCAAGGACA
AAAAACTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCCCCGCTGGGCGAGATCCTGGCGGCGGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTGATCCACGAGCTGGAGCGCTATAT
CAACGCGCTGGGTACCATCGCCGCCATGGCGCCGTTGCTGGGTCTGCTGGGCACCGTGTTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCACGGGCATGACGACCAACGCCGCAGTGTTGGCCGGCGGCATTTCCAAGGCCTTGATTACCACGGCT
TCCGGCCTGATCGTTGGTATCCCGTCGGTGTTCTTCCACCGGTTTTTGCAACGGCGCATTGATGAACTCGTCGTAGGCAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTTCAGGGCGACCGTGACGTTGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment