Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MXF72_RS00545 Genome accession   NZ_CP095873
Coordinates   129371..129886 (+) Length   171 a.a.
NCBI ID   WP_035269622.1    Uniprot ID   A0AAE9H8A3
Organism   Alcaligenes faecalis strain D334     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 124371..134886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXF72_RS00535 (MXF72_00535) uvrA 124825..127788 (-) 2964 WP_247966907.1 excinuclease ABC subunit UvrA -
  MXF72_RS00540 (MXF72_00540) - 127900..129111 (+) 1212 WP_022983677.1 MFS transporter -
  MXF72_RS00545 (MXF72_00545) ssb 129371..129886 (+) 516 WP_035269622.1 single-stranded DNA-binding protein Machinery gene
  MXF72_RS00550 (MXF72_00550) - 130072..132543 (-) 2472 WP_247966250.1 TonB-dependent receptor -
  MXF72_RS00555 (MXF72_00555) - 132623..133564 (-) 942 WP_035269623.1 FecR family protein -
  MXF72_RS00560 (MXF72_00560) - 133585..134085 (-) 501 WP_247966251.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18816.84 Da        Isoelectric Point: 5.3412

>NTDB_id=678969 MXF72_RS00545 WP_035269622.1 129371..129886(+) (ssb) [Alcaligenes faecalis strain D334]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGGAPAPQRAQRPAPQQQQQQQAPRNNAPMSD
NLADMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=678969 MXF72_RS00545 WP_035269622.1 129371..129886(+) (ssb) [Alcaligenes faecalis strain D334]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCCGGCGAGCGCCGTGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTCTGGCTGAAATTGCAGGTGAGTACCTGCGTAAAGGCCGCCCTGTTTACGTAGAAGGT
CGTCTGCGCACCCGTAAATGGACAGGCCAGGACGGTCAGGAGCGTTTCACCACGGAAATCATCGCCGAGCAAATGCAAAT
GCTGGGCGGCCGTGATGGTGGTGATATGGGCGGCGGCAGCATGGGTGGTGGCGAATACGGTGGCGGCGGTGGTGCACCAG
CTCCGCAACGTGCTCAGCGTCCAGCGCCTCAGCAACAGCAGCAACAACAGGCCCCACGTAATAACGCTCCTATGTCGGAC
AATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.323

100

0.567
  ssb Glaesserella parasuis strain SC1401

48.187

100

0.544
  ssb Neisseria meningitidis MC58

48.066

100

0.509
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.509