Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MYA84_RS15115 Genome accession   NZ_CP095872
Coordinates   3046167..3046748 (-) Length   193 a.a.
NCBI ID   WP_071320869.1    Uniprot ID   A0A1P8PGJ6
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3041167..3051748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS15090 (MYA84_15045) - 3041213..3042520 (-) 1308 WP_071320867.1 FAD-dependent oxidoreductase -
  MYA84_RS15095 (MYA84_15050) - 3042935..3043813 (-) 879 WP_111810267.1 pirin family protein -
  MYA84_RS15100 (MYA84_15055) ahpC 3044137..3044700 (-) 564 WP_076752916.1 alkyl hydroperoxide reductase subunit C -
  MYA84_RS15105 (MYA84_15060) - 3044868..3045482 (-) 615 WP_111810737.1 TetR/AcrR family transcriptional regulator -
  MYA84_RS15110 (MYA84_15065) - 3045627..3046112 (+) 486 WP_111810266.1 hotdog fold domain-containing protein -
  MYA84_RS15115 (MYA84_15070) ssb 3046167..3046748 (-) 582 WP_071320869.1 single-stranded DNA-binding protein Machinery gene
  MYA84_RS15120 (MYA84_15075) - 3046800..3048164 (-) 1365 WP_184103609.1 MFS transporter -
  MYA84_RS15125 (MYA84_15080) - 3048319..3049407 (-) 1089 WP_184103612.1 DUF475 domain-containing protein -
  MYA84_RS15130 (MYA84_15085) tenA 3049630..3050298 (+) 669 WP_048882199.1 thiaminase II -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20976.78 Da        Isoelectric Point: 6.4820

>NTDB_id=678968 MYA84_RS15115 WP_071320869.1 3046167..3046748(-) (ssb) [Acinetobacter schindleri strain H4-3-C1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQSDNGGFAQPRFNNNQGGYGNNNAGQQGYNAPQQGGFNNAPAGG
NGYGNNNPSGFAPKSAPAPVAAPAADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=678968 MYA84_RS15115 WP_071320869.1 3046167..3046748(-) (ssb) [Acinetobacter schindleri strain H4-3-C1]
ATGCGTGGTGTAAATAAGGTTATTTTAGTAGGTACTTTAGGTCGAGATCCTGAAACAAAAACTTTCCCGAATGGGGGTTC
TCTCACTCAATTCTCTATCGCGACCAGTGATTCGTGGACGGATAAGAACACTGGTGAGCGTAAAGAGCAAACAGAATGGC
ACCGCATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAGTATCTACGTAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAGTGGACAGACCAAAGTGGTCAAGAGCGTTACACTACAGAAATCCGTGGTGAGCAGATGCAAAT
GCTGGATTCTGGCCGTCCTCAAGGTGAACAGTCAGACAATGGCGGTTTTGCACAGCCACGTTTCAACAATAACCAGGGCG
GCTATGGCAATAACAATGCTGGTCAACAAGGTTATAATGCACCACAGCAAGGTGGCTTCAATAATGCACCTGCGGGTGGT
AATGGCTATGGCAATAATAACCCAAGCGGTTTTGCGCCAAAATCTGCACCAGCTCCAGTTGCAGCGCCTGCAGCAGACCT
GGATGATGACTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8PGJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.515

100

0.508
  ssb Vibrio cholerae strain A1552

44.67

100

0.456
  ssb Neisseria gonorrhoeae MS11

41.053

98.446

0.404
  ssb Neisseria meningitidis MC58

41.053

98.446

0.404