Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MYG04_RS16285 Genome accession   NZ_CP095856
Coordinates   3375592..3376128 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EC6563     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3370592..3381128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYG04_RS16265 (MYG04_16265) aphA 3370880..3371593 (+) 714 WP_001395166.1 acid phosphatase AphA -
  MYG04_RS16270 (MYG04_16270) yjbQ 3371704..3372120 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MYG04_RS16275 (MYG04_16275) yjbR 3372124..3372480 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  MYG04_RS16280 (MYG04_16280) uvrA 3372515..3375337 (-) 2823 WP_000357744.1 excinuclease ABC subunit UvrA -
  MYG04_RS16285 (MYG04_16285) ssb 3375592..3376128 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MYG04_RS16290 (MYG04_16290) yjcB 3376227..3376508 (-) 282 WP_001295689.1 YjcB family protein -
  MYG04_RS16295 (MYG04_16295) pdeC 3376938..3378524 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  MYG04_RS16300 (MYG04_16300) soxS 3378527..3378850 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  MYG04_RS16305 (MYG04_16305) soxR 3378936..3379400 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=678856 MYG04_RS16285 WP_000168305.1 3375592..3376128(+) (ssb) [Escherichia coli strain EC6563]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=678856 MYG04_RS16285 WP_000168305.1 3375592..3376128(+) (ssb) [Escherichia coli strain EC6563]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489