Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MU856_RS17760 Genome accession   NZ_CP095845
Coordinates   3680304..3680849 (+) Length   181 a.a.
NCBI ID   WP_062901267.1    Uniprot ID   -
Organism   Sphingopyxis sp. GC21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3675304..3685849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU856_RS17740 - 3676471..3677403 (+) 933 WP_263588116.1 DMT family transporter -
  MU856_RS17745 - 3677403..3678089 (+) 687 WP_202988420.1 COQ9 family protein -
  MU856_RS17750 - 3678153..3678404 (+) 252 WP_003046824.1 FeoA family protein -
  MU856_RS17755 feoB 3678401..3680272 (+) 1872 WP_062901268.1 ferrous iron transporter B -
  MU856_RS17760 ssb 3680304..3680849 (+) 546 WP_062901267.1 single-stranded DNA-binding protein Machinery gene
  MU856_RS17765 - 3680863..3681333 (+) 471 WP_003046818.1 MmcB family DNA repair protein -
  MU856_RS17770 - 3681343..3681705 (-) 363 WP_062901266.1 hypothetical protein -
  MU856_RS17775 - 3681702..3682328 (-) 627 WP_263589000.1 riboflavin synthase -
  MU856_RS17780 ribD 3682337..3683287 (-) 951 WP_062903051.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  MU856_RS17785 - 3683314..3683778 (-) 465 WP_234179347.1 hypothetical protein -
  MU856_RS17790 - 3684055..3684516 (-) 462 WP_186401384.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18647.36 Da        Isoelectric Point: 5.0006

>NTDB_id=678814 MU856_RS17760 WP_062901267.1 3680304..3680849(+) (ssb) [Sphingopyxis sp. GC21]
MAGSVNKVILIGNLGADPEIKSFQNGGKIANIRIATSEQWKDRMTGERKERTEWHNVVINGDGLVGVVERYLKKGSKVYI
EGSLRTRKWQDRDGNDRYTTEVVVAGMGGTLTMLDGAPGGGGGGSRGGDSWSQGGGSSGGWDQGGAASGGSSGGGWNQGG
GGASGGGRPPFDDDLDDDVPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=678814 MU856_RS17760 WP_062901267.1 3680304..3680849(+) (ssb) [Sphingopyxis sp. GC21]
ATGGCTGGCAGCGTCAACAAAGTTATTCTGATCGGCAATCTGGGCGCCGATCCCGAAATCAAGTCGTTCCAGAACGGCGG
CAAGATTGCCAATATCCGCATCGCGACCTCCGAACAGTGGAAGGACCGCATGACCGGAGAGCGCAAGGAGCGCACCGAAT
GGCACAATGTCGTCATCAACGGCGACGGCCTCGTCGGCGTCGTCGAGCGCTACCTTAAAAAGGGCTCGAAGGTTTATATC
GAAGGATCCTTGCGCACTCGCAAGTGGCAGGACCGTGACGGCAATGATCGCTACACGACCGAAGTCGTCGTCGCTGGCAT
GGGCGGCACCTTGACCATGCTCGACGGTGCGCCTGGCGGCGGCGGCGGCGGCTCGCGCGGCGGCGATAGCTGGTCGCAGG
GCGGCGGATCGAGCGGCGGCTGGGATCAGGGTGGCGCCGCGTCCGGCGGCAGTTCGGGCGGCGGCTGGAACCAGGGCGGC
GGCGGCGCCTCGGGCGGCGGACGTCCGCCGTTCGACGACGATCTGGACGACGACGTCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

97.79

0.481
  ssb Glaesserella parasuis strain SC1401

44.149

100

0.459
  ssb Neisseria meningitidis MC58

36.413

100

0.37
  ssb Neisseria gonorrhoeae MS11

36.413

100

0.37