Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ATE38_RS06050 Genome accession   NZ_AP017377
Coordinates   1196444..1196941 (+) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain OC8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1191444..1201941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE38_RS06015 - 1191468..1192091 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ATE38_RS06020 comGA 1192143..1193117 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  ATE38_RS06025 comGB 1193089..1194117 (+) 1029 WP_053015094.1 competence type IV pilus assembly protein ComGB Machinery gene
  ATE38_RS06030 - 1194203..1195375 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  ATE38_RS06035 comGC 1195505..1195816 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ATE38_RS06040 comGD 1195794..1196240 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  ATE38_RS06045 comGE 1196227..1196526 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  ATE38_RS06050 comGF 1196444..1196941 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  ATE38_RS06055 - 1197038..1197184 (+) 147 WP_001789879.1 hypothetical protein -
  ATE38_RS06060 - 1197174..1197698 (+) 525 WP_001015117.1 shikimate kinase -
  ATE38_RS06065 gcvT 1197857..1198948 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  ATE38_RS06070 gcvPA 1198968..1200314 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ATE38_RS06075 gcvPB 1200307..1201779 (+) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=67871 ATE38_RS06050 WP_001789864.1 1196444..1196941(+) (comGF) [Staphylococcus aureus strain OC8]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=67871 ATE38_RS06050 WP_001789864.1 1196444..1196941(+) (comGF) [Staphylococcus aureus strain OC8]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964

Multiple sequence alignment