Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JLF30_RS18700 Genome accession   NZ_AP022478
Coordinates   3921747..3922223 (-) Length   158 a.a.
NCBI ID   WP_001424026.1    Uniprot ID   -
Organism   Escherichia coli strain STN0717-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3916747..3927223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF30_RS18665 ykgL 3916814..3917039 (-) 226 Protein_3698 protein YkgL -
  JLF30_RS18670 - 3917826..3918523 (+) 698 WP_151884388.1 IS1 family transposase -
  JLF30_RS18675 (STN0717ESC11_36110) - 3918540..3919222 (+) 683 Protein_3700 integrase domain-containing protein -
  JLF30_RS18680 (STN0717ESC11_36120) - 3919996..3920364 (-) 369 WP_001094398.1 TA system toxin CbtA family protein -
  JLF30_RS18685 (STN0717ESC11_36130) - 3920385..3920743 (-) 359 Protein_3702 type IV toxin-antitoxin system YeeU family antitoxin -
  JLF30_RS18690 (STN0717ESC11_36140) - 3920794..3921438 (-) 645 WP_000086755.1 hypothetical protein -
  JLF30_RS18695 (STN0717ESC11_36150) - 3921457..3921678 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  JLF30_RS18700 (STN0717ESC11_36160) radC 3921747..3922223 (-) 477 WP_001424026.1 RadC family protein Machinery gene
  JLF30_RS18705 (STN0717ESC11_36170) - 3922239..3922712 (-) 474 WP_000855059.1 antirestriction protein -
  JLF30_RS18710 (STN0717ESC11_36180) - 3923054..3923875 (-) 822 WP_001234565.1 DUF932 domain-containing protein -
  JLF30_RS18715 - 3923976..3924184 (-) 209 Protein_3708 DUF905 family protein -
  JLF30_RS18720 (STN0717ESC11_36190) - 3924285..3924740 (-) 456 WP_000581506.1 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9859

>NTDB_id=67868 JLF30_RS18700 WP_001424026.1 3921747..3922223(-) (radC) [Escherichia coli strain STN0717-11]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=67868 JLF30_RS18700 WP_001424026.1 3921747..3922223(-) (radC) [Escherichia coli strain STN0717-11]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment