Detailed information NTG0067869

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ATE38_RS06040
• Genome accession: NZ_AP017377
• Coordinates: 1195794..1196240 (+)
• Length: 148 a.a.
• NCBI ID: WP_001790850.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain OC8
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1194203..1195375	1195794..1196240	flank	419

Gene organization within MGE regions

Location: 1194203..1196240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATE38_RS06030	-	1194203..1195375 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-
ATE38_RS06035	comGC	1195505..1195816 (+)	312	WP_000472256.1	competence type IV pilus major pilin ComGC	Machinery gene
ATE38_RS06040	comGD	1195794..1196240 (+)	447	WP_001790850.1	competence type IV pilus minor pilin ComGD	Machinery gene

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17213.42 Da
• Isoelectric Point: 10.3682

>NTDB_id=67869 ATE38_RS06040 WP_001790850.1 1195794..1196240(+) (comGD) [Staphylococcus aureus strain OC8]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=67869 ATE38_RS06040 WP_001790850.1 1195794..1196240(+) (comGD) [Staphylococcus aureus strain OC8]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993