Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MYW70_RS01505 Genome accession   NZ_CP095785
Coordinates   352209..352733 (-) Length   174 a.a.
NCBI ID   WP_109398347.1    Uniprot ID   A0AAW7CVG7
Organism   Proteus faecis strain 19MO01SH08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 347209..357733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYW70_RS01485 (MYW70_01485) plsB 347487..349970 (-) 2484 WP_109398350.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  MYW70_RS01490 (MYW70_01490) - 350101..350472 (+) 372 WP_109398349.1 diacylglycerol kinase -
  MYW70_RS01495 (MYW70_01495) lexA 350600..351211 (+) 612 WP_023583074.1 transcriptional repressor LexA -
  MYW70_RS01500 (MYW70_01500) zur 351321..351851 (-) 531 WP_088494416.1 zinc uptake transcriptional repressor Zur -
  MYW70_RS01505 (MYW70_01505) ssb 352209..352733 (-) 525 WP_109398347.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MYW70_RS01510 (MYW70_01510) uvrA 352986..355820 (+) 2835 WP_342639729.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18847.89 Da        Isoelectric Point: 4.9468

>NTDB_id=678443 MYW70_RS01505 WP_109398347.1 352209..352733(-) (ssb) [Proteus faecis strain 19MO01SH08]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGGQGGWGQPQQPQASQQFSGGAQSRPQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=678443 MYW70_RS01505 WP_109398347.1 352209..352733(-) (ssb) [Proteus faecis strain 19MO01SH08]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCCAACCTAACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGCCAATTACAAACACGTAAATGGCAAGATCAAAGCGGCCAAGACAGATATAGCACTGAAGTTGTTGTTAACATCGG
CGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAACGCGCCATCTCAAGGTGGCCAAGGCGGTTGGGGCCAAC
CACAACAACCACAAGCATCTCAACAATTTAGCGGTGGTGCGCAATCTCGCCCACAACAACCAGCAGCAGCTCCAGCACCA
AGTAATGAACCACCAATGGATTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.586

100

0.776
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

47.753

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.489