NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	MXH81_RS16345	Genome accession	NZ_CP095759
Coordinates	3204045..3204701 (-)	Length	218 a.a.
NCBI ID	WP_345734165.1	Uniprot ID	-
Organism	Bacillus safensis strain ZK-1
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3199045..3209701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MXH81_RS16310 (MXH81_16310)	fliW	3199183..3199617 (-)	435	WP_024423615.1	flagellar assembly protein FliW	-
MXH81_RS16315 (MXH81_16315)	-	3199646..3200224 (-)	579	WP_247721645.1	DUF6470 family protein	-
MXH81_RS16320 (MXH81_16320)	flgL	3200271..3201179 (-)	909	WP_024423617.1	flagellar hook-associated protein FlgL	-
MXH81_RS16325 (MXH81_16325)	flgK	3201189..3202709 (-)	1521	WP_024423618.1	flagellar hook-associated protein FlgK	-
MXH81_RS16330 (MXH81_16330)	-	3202725..3203207 (-)	483	WP_087977062.1	flagellar protein FlgN	-
MXH81_RS16335 (MXH81_16335)	flgM	3203226..3203489 (-)	264	WP_024423620.1	flagellar biosynthesis anti-sigma factor FlgM	-
MXH81_RS16340 (MXH81_16340)	-	3203569..3203988 (-)	420	WP_024423621.1	TIGR03826 family flagellar region protein	-
MXH81_RS16345 (MXH81_16345)	comFC	3204045..3204701 (-)	657	WP_345734165.1	ComF family protein	Machinery gene
MXH81_RS16350 (MXH81_16350)	-	3204728..3205021 (-)	294	WP_024423623.1	competence protein ComFB	-
MXH81_RS16355 (MXH81_16355)	comFA	3205070..3206467 (-)	1398	WP_282102248.1	DEAD/DEAH box helicase	Machinery gene
MXH81_RS16360 (MXH81_16360)	-	3206588..3207430 (-)	843	WP_024423625.1	DegV family protein	-
MXH81_RS16365 (MXH81_16365)	degU	3207646..3208335 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
MXH81_RS16370 (MXH81_16370)	degS	3208400..3209575 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

Download Length: 218 a.a. Molecular weight: 24932.06 Da Isoelectric Point: 9.9149

                                >NTDB_id=678124 MXH81_RS16345 WP_345734165.1 3204045..3204701(-) (comFC) [Bacillus safensis strain ZK-1]

MPAFTWKSFLLLNDDRLCVACKNHLVKIEHPICPTCGRGQSNDQLCQDCNRWNERSDSIKILVKNRSVYTYNELMKDVLA

RFKFRGDTALAELFKKDVQAAFKHSFCIKDPLLIPIPLSHERLKERGFNQSVIIASLLDKPILQPLVKIHQSKQSKKKKN

ERLDQKGLFQIKQTDAIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide

Download Length: 657 bp

                                >NTDB_id=678124 MXH81_RS16345 WP_345734165.1 3204045..3204701(-) (comFC) [Bacillus safensis strain ZK-1]

GTGCCTGCTTTTACATGGAAATCATTCCTACTATTAAATGATGATCGCCTTTGTGTAGCATGTAAGAATCACTTAGTGAA

GATTGAGCATCCTATTTGCCCAACATGCGGAAGGGGGCAGTCAAATGACCAATTGTGCCAGGACTGTAACAGATGGAATG

AACGCTCTGATTCTATTAAAATCCTTGTAAAAAATAGGTCAGTTTATACTTACAACGAGTTGATGAAAGATGTCCTTGCC

CGCTTTAAATTTCGGGGTGATACGGCTTTAGCTGAGCTGTTTAAAAAAGATGTACAAGCAGCATTTAAACATTCCTTCTG

CATAAAAGACCCATTGCTGATACCGATTCCTTTAAGTCATGAAAGACTAAAAGAAAGAGGATTTAATCAGTCCGTGATAA

TCGCTTCTTTGCTAGATAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAGTCTAAAAAAAAGAAAAAT

GAACGCCTAGATCAAAAAGGATTGTTTCAAATAAAGCAAACAGATGCGATTGTTCAAAGGGATATTATATTAGTTGATGA

TATCTATACAACGGGAGCAACCATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTAAAAGTGTTTCTTCTTTTA

CGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-49)

Phosphoribosyl transferase domain (Pribosyltran)

(127-216)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	99.083	0.495
comFC/cflB	Streptococcus pneumoniae TIGR4	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae D39	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae R6	36.744	98.624	0.362

Detailed information NTG0678124