Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MXH81_RS16355 Genome accession   NZ_CP095759
Coordinates   3205070..3206467 (-) Length   465 a.a.
NCBI ID   WP_282102248.1    Uniprot ID   -
Organism   Bacillus safensis strain ZK-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3200070..3211467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MXH81_RS16320 (MXH81_16320) flgL 3200271..3201179 (-) 909 WP_024423617.1 flagellar hook-associated protein FlgL -
  MXH81_RS16325 (MXH81_16325) flgK 3201189..3202709 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  MXH81_RS16330 (MXH81_16330) - 3202725..3203207 (-) 483 WP_087977062.1 flagellar protein FlgN -
  MXH81_RS16335 (MXH81_16335) flgM 3203226..3203489 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  MXH81_RS16340 (MXH81_16340) - 3203569..3203988 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  MXH81_RS16345 (MXH81_16345) comFC 3204045..3204701 (-) 657 WP_345734165.1 ComF family protein Machinery gene
  MXH81_RS16350 (MXH81_16350) - 3204728..3205021 (-) 294 WP_024423623.1 competence protein ComFB -
  MXH81_RS16355 (MXH81_16355) comFA 3205070..3206467 (-) 1398 WP_282102248.1 DEAD/DEAH box helicase Machinery gene
  MXH81_RS16360 (MXH81_16360) - 3206588..3207430 (-) 843 WP_024423625.1 DegV family protein -
  MXH81_RS16365 (MXH81_16365) degU 3207646..3208335 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MXH81_RS16370 (MXH81_16370) degS 3208400..3209575 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MXH81_RS16375 (MXH81_16375) - 3209796..3210464 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53223.11 Da        Isoelectric Point: 9.9068

>NTDB_id=678125 MXH81_RS16355 WP_282102248.1 3205070..3206467(-) (comFA) [Bacillus safensis strain ZK-1]
MNMDKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETCRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSSQRFQITPLVITTTHQLMRYKNAFDVLIIDEVDAFPYSMDE
RLQFAVLKTMRKNRGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEQPLPVPTFHWIGHWKKKLKKNQLPPKVMNWIQ
RHIANRRRILLFVPSIATMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=678125 MXH81_RS16355 WP_282102248.1 3205070..3206467(-) (comFA) [Bacillus safensis strain ZK-1]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGTCATCTGCTCACCGTTGAAACAAAGTGCCCACA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAGGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTAGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGGTGACAATTACCGTACTTTACGGAGGCAGTTCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTATAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGACGATGAGAAAGAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACCATTACCCGTAC
CGACCTTTCATTGGATCGGTCATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATACAG
AGACATATTGCAAATAGGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAATGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGAGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATATCTGGACGGGTAGGCAGACACCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.412

98.065

0.514
  comFA/cflA Streptococcus pneumoniae Rx1

38.095

94.839

0.361
  comFA/cflA Streptococcus pneumoniae D39

38.095

94.839

0.361
  comFA/cflA Streptococcus pneumoniae R6

38.095

94.839

0.361