Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L8T27_RS19335 Genome accession   NZ_CP095743
Coordinates   3870821..3871339 (-) Length   172 a.a.
NCBI ID   WP_233319068.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3865821..3876339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS19315 (L8T27_019320) dnaB 3866318..3867682 (-) 1365 WP_233319065.1 replicative DNA helicase -
  L8T27_RS19320 (L8T27_019325) rplI 3867827..3868276 (-) 450 WP_237942182.1 50S ribosomal protein L9 -
  L8T27_RS19325 (L8T27_019330) - 3868273..3870246 (-) 1974 WP_233319067.1 DHH family phosphoesterase -
  L8T27_RS19330 (L8T27_019335) rpsR 3870543..3870779 (-) 237 WP_233319107.1 30S ribosomal protein S18 -
  L8T27_RS19335 (L8T27_019340) ssbA 3870821..3871339 (-) 519 WP_233319068.1 single-stranded DNA-binding protein Machinery gene
  L8T27_RS19340 (L8T27_019345) rpsF 3871394..3871684 (-) 291 WP_233319109.1 30S ribosomal protein S6 -
  L8T27_RS19345 (L8T27_019350) - 3871831..3872982 (-) 1152 WP_237942188.1 glycosyltransferase family 1 protein -
  L8T27_RS19350 (L8T27_019355) ychF 3873245..3874345 (-) 1101 WP_233319072.1 redox-regulated ATPase YchF -
  L8T27_RS19355 (L8T27_019360) - 3874508..3874705 (-) 198 WP_233319074.1 DUF951 domain-containing protein -
  L8T27_RS19360 (L8T27_019365) - 3874719..3875579 (-) 861 WP_233319076.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19404.20 Da        Isoelectric Point: 4.8282

>NTDB_id=678062 L8T27_RS19335 WP_233319068.1 3870821..3871339(-) (ssbA) [Niallia sp. Man26]
MMNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRLQTR
SYEGQDGKRVYVTEVQAESVQFLEPRNSSSGNRNDNMNYGAPREQDNPFGGSNNYQNQRPQNQNRNNDYTRMDEDPFANS
GQIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=678062 L8T27_RS19335 WP_233319068.1 3870821..3871339(-) (ssbA) [Niallia sp. Man26]
ATGATGAACCGTGTTGTTCTTGTTGGCCGATTGACGAAGGATCCTGAACTGCGATACACACCAAGTGGAGCTGCTGTTGC
AACTTTCACTCTTGCGGTCAACCGTACTTTTACGAACCAACAAGGTGAAAGAGAAGCAGACTTTATCAATTGTGTAGTCT
GGAGGAAACCTGCAGAGAACGTAGCTAATTTCTTGAAGAAAGGAAGCTTAGCTGGCGTTGACGGCAGACTTCAAACGCGC
AGTTATGAGGGACAAGATGGGAAACGTGTCTATGTAACAGAAGTGCAGGCGGAAAGTGTTCAATTTCTTGAACCTAGAAA
CAGCAGCTCTGGAAATAGAAATGACAACATGAATTATGGTGCGCCAAGGGAACAAGATAATCCTTTTGGAGGCTCTAATA
ATTATCAGAATCAGCGACCTCAAAACCAAAATAGAAATAACGATTATACGAGAATGGACGAGGATCCATTTGCAAATAGC
GGTCAAATCGATATTTCAGATGATGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.508

100

0.721
  ssb Latilactobacillus sakei subsp. sakei 23K

58.382

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.807

100

0.366