Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L2Y96_RS03170 Genome accession   NZ_CP095741
Coordinates   717436..718494 (+) Length   352 a.a.
NCBI ID   WP_247332077.1    Uniprot ID   -
Organism   Luteibacter aegosomaticola strain 335     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 712436..723494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y96_RS03155 (L2Y96_03155) - 713402..713854 (+) 453 WP_247332040.1 hypothetical protein -
  L2Y96_RS03160 (L2Y96_03160) - 713939..714589 (-) 651 WP_247332074.1 hypothetical protein -
  L2Y96_RS03165 (L2Y96_03165) - 714624..717200 (-) 2577 WP_247332075.1 penicillin-binding protein 1A -
  L2Y96_RS03170 (L2Y96_03170) comM 717436..718494 (+) 1059 WP_247332077.1 pilus assembly protein PilM Machinery gene
  L2Y96_RS03175 (L2Y96_03175) - 718494..719243 (+) 750 WP_247332079.1 PilN domain-containing protein -
  L2Y96_RS03180 (L2Y96_03180) pilO 719240..719893 (+) 654 WP_247332081.1 type 4a pilus biogenesis protein PilO -
  L2Y96_RS03185 (L2Y96_03185) - 719890..720417 (+) 528 WP_247332083.1 pilus assembly protein PilP -
  L2Y96_RS03190 (L2Y96_03190) - 720482..722665 (+) 2184 WP_247336877.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37898.57 Da        Isoelectric Point: 4.4923

>NTDB_id=677972 L2Y96_RS03170 WP_247332077.1 717436..718494(+) (comM) [Luteibacter aegosomaticola strain 335]
MGLFTPKAAPLIGVDISSTAVKLLQLSEAGGRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALARSGAKVKHAAAA
VAGSAVITRIIPMSADLSEDDLEGQIQVEANQYIPYPIEEVSLDFEVMGPVRDNPEMNNILLAASRTENVDMRIAALDLG
GLTARVIDVEAFAMENAFAMVADQLAVSRDALVAVVDIGATMTTLAVLKNQRTIYSREQVFGGKQLTDEIMRRYGLSYEE
AGRAKRKGGLPESYEMEALEPFKESLVQQVSRLLQFFFAGSEYSRVDQVVLAGGCAAIEGITEILEQQLGVPCVVANPLA
RMSLSSKVQAQTLAQDAPALMIAVGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=677972 L2Y96_RS03170 WP_247332077.1 717436..718494(+) (comM) [Luteibacter aegosomaticola strain 335]
GTGGGGCTCTTTACACCCAAAGCGGCGCCGTTGATCGGCGTCGACATCAGTTCGACCGCAGTAAAGCTGCTACAGCTCAG
TGAGGCAGGCGGGCGCTATCGCGTCGAGCACTATGCCGTTGAGCCGTTGCCGCCCAATGCCGTCGTCGAAAAGAACATCG
TCGAGGTCGAGGCGGTTGGCGAGGCTATCCGCCGCGCCCTCGCTCGCTCCGGCGCCAAGGTGAAGCACGCCGCCGCGGCT
GTCGCGGGGTCGGCGGTTATTACCCGGATCATACCCATGTCGGCCGACCTCTCCGAGGACGACCTCGAGGGCCAGATCCA
GGTAGAGGCTAACCAGTACATTCCATACCCGATCGAGGAAGTTAGCCTCGATTTCGAGGTGATGGGCCCTGTTCGCGACA
ACCCGGAGATGAACAACATCCTCCTGGCCGCCTCGCGGACGGAAAACGTCGATATGCGCATCGCAGCGCTCGACCTCGGC
GGCTTGACCGCCCGGGTGATCGACGTCGAGGCCTTCGCCATGGAGAACGCCTTCGCCATGGTCGCTGACCAGCTGGCGGT
TTCCCGCGATGCCCTGGTGGCCGTGGTGGATATCGGCGCGACCATGACGACCCTCGCGGTCCTCAAGAACCAGCGCACCA
TCTATTCGCGTGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAGATCATGCGCCGCTACGGCCTTTCCTATGAGGAA
GCGGGCCGGGCCAAGCGCAAGGGCGGCCTGCCCGAGTCGTACGAGATGGAAGCGCTCGAGCCGTTCAAGGAGTCGCTGGT
CCAGCAGGTCAGCCGCCTCCTGCAGTTCTTCTTCGCCGGCAGCGAGTACAGCCGCGTCGACCAGGTAGTACTGGCGGGCG
GTTGCGCGGCCATCGAAGGCATTACCGAAATCCTCGAGCAGCAGCTTGGCGTGCCCTGCGTGGTGGCCAACCCGCTGGCT
CGCATGTCCCTGTCCAGCAAGGTCCAGGCCCAGACACTCGCCCAGGATGCCCCCGCGCTGATGATCGCCGTCGGCCTGGC
CATGCGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.585

98.58

0.509
  pilM Acinetobacter baumannii D1279779

52.339

97.159

0.509
  comM Acinetobacter nosocomialis M2

52.047

97.159

0.506
  pilM Legionella pneumophila strain ERS1305867

41.36

100

0.415