Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   L2Y94_RS18465 Genome accession   NZ_CP095740
Coordinates   4105825..4106883 (-) Length   352 a.a.
NCBI ID   WP_283248498.1    Uniprot ID   -
Organism   Luteibacter aegosomatis strain 321     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4100825..4111883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y94_RS18445 (L2Y94_18445) - 4101734..4103899 (-) 2166 WP_247375333.1 type IV pilus secretin PilQ -
  L2Y94_RS18450 (L2Y94_18450) - 4103980..4104507 (-) 528 WP_247370873.1 pilus assembly protein PilP -
  L2Y94_RS18455 (L2Y94_18455) pilO 4104507..4105160 (-) 654 WP_247370876.1 type 4a pilus biogenesis protein PilO -
  L2Y94_RS18460 (L2Y94_18460) - 4105157..4105825 (-) 669 WP_247370879.1 PilN domain-containing protein -
  L2Y94_RS18465 (L2Y94_18465) pilM 4105825..4106883 (-) 1059 WP_283248498.1 pilus assembly protein PilM Machinery gene
  L2Y94_RS18470 (L2Y94_18470) - 4107126..4109705 (+) 2580 WP_247370881.1 penicillin-binding protein 1A -
  L2Y94_RS18475 (L2Y94_18475) - 4109762..4110418 (+) 657 WP_247370883.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37950.64 Da        Isoelectric Point: 4.5245

>NTDB_id=677969 L2Y94_RS18465 WP_283248498.1 4105825..4106883(-) (pilM) [Luteibacter aegosomatis strain 321]
MGLFTPKSTPLIGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALARSGAKLKHAAAA
VAGSAVITRVIPMSADLSDDDLEGQIMVEANQYIPYPIEEVSLDFEVLGPVRDNPEMNNVLLAASRTENVDMRIAALDLG
GLTAKVVDVEAFAMENAFGMVADQLQVPRDALVAVVDIGATMTTLAVLKNQRTIYSREQVFGGKQLTDEIMRRYGLSYEE
AGRAKRKGGLPESYEMEALEPFKESLVQQVSRLLQFFFAGSEYSRVDQVVLAGGCAAIEGITELLEQQIGVPCVVANPLA
RMALSNRVQAQTLAQDAPALMIAVGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=677969 L2Y94_RS18465 WP_283248498.1 4105825..4106883(-) (pilM) [Luteibacter aegosomatis strain 321]
GTGGGGCTCTTTACACCCAAATCGACGCCATTGATCGGCGTCGACATCAGTTCGACCGCGGTCAAGCTGCTGCAACTCAG
CCAGGCGGGCGGGCGTTACCGGGTCGAGCACTATGCCGTCGAACCGTTGCCTCCCAACGCCGTCGTCGAGAAAAACATCG
TCGAGGTCGAGGCGGTGGGCGAAGCCATTCGCCGCGCCCTGGCCCGCTCCGGCGCCAAGCTCAAGCACGCGGCGGCCGCG
GTGGCCGGCTCGGCGGTGATCACCCGCGTCATTCCCATGTCGGCCGATCTCTCCGATGACGACCTCGAAGGCCAGATCAT
GGTCGAGGCCAACCAGTACATTCCTTATCCCATCGAGGAAGTGAGCCTCGATTTCGAGGTGCTGGGCCCGGTCCGCGACA
ACCCCGAAATGAACAACGTGCTGCTGGCCGCCTCGCGTACCGAGAACGTGGACATGCGCATCGCCGCGCTCGACCTGGGC
GGGCTCACCGCCAAGGTGGTCGACGTCGAGGCGTTCGCCATGGAAAACGCCTTCGGCATGGTCGCCGACCAGTTGCAGGT
GCCCCGCGACGCCCTGGTGGCGGTGGTGGACATCGGCGCCACGATGACCACCCTGGCCGTGCTGAAGAACCAGCGCACCA
TCTATTCGCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAGATCATGCGCCGCTACGGCCTGTCCTACGAGGAG
GCCGGCCGCGCCAAGCGCAAGGGCGGCCTGCCCGAGTCCTACGAGATGGAGGCCCTCGAGCCGTTCAAGGAGTCGCTGGT
GCAGCAGGTGAGCCGCCTGCTCCAGTTCTTCTTTGCCGGCAGCGAATACAGCCGCGTCGACCAGGTGGTGCTGGCCGGTG
GCTGCGCGGCCATCGAAGGCATCACCGAGCTGCTCGAGCAGCAGATCGGCGTGCCCTGCGTGGTGGCCAATCCGCTGGCG
CGCATGGCGCTTTCCAATCGCGTGCAGGCGCAGACGCTGGCCCAGGACGCCCCGGCCCTGATGATCGCCGTGGGCCTGGC
CATGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.273

100

0.523
  comM Acinetobacter nosocomialis M2

51.989

100

0.52
  comM Acinetobacter baylyi ADP1

52.047

97.159

0.506
  pilM Legionella pneumophila strain ERS1305867

42.21

100

0.423