Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG906_RS19285 Genome accession   NZ_CP109500
Coordinates   4339024..4340442 (-) Length   472 a.a.
NCBI ID   WP_267801316.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01426     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4334024..4345442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG906_RS19260 (OG906_19260) - 4334349..4334909 (-) 561 WP_053678383.1 SigE family RNA polymerase sigma factor -
  OG906_RS19265 (OG906_19265) - 4335129..4336046 (-) 918 WP_329444421.1 A/G-specific adenine glycosylase -
  OG906_RS19270 (OG906_19270) - 4336076..4336684 (-) 609 WP_267801314.1 phosphatase PAP2 family protein -
  OG906_RS19275 (OG906_19275) - 4336845..4337654 (+) 810 WP_329444423.1 hypothetical protein -
  OG906_RS19280 (OG906_19280) disA 4337715..4338839 (-) 1125 WP_053678377.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG906_RS19285 (OG906_19285) radA/sms 4339024..4340442 (-) 1419 WP_267801316.1 DNA repair protein RadA Machinery gene
  OG906_RS19290 (OG906_19290) - 4340746..4342494 (+) 1749 WP_329444426.1 hypothetical protein -
  OG906_RS19295 (OG906_19295) - 4342568..4343395 (-) 828 WP_329444428.1 hypothetical protein -
  OG906_RS19300 (OG906_19300) - 4343459..4344388 (+) 930 WP_329444430.1 Ppx/GppA phosphatase family protein -
  OG906_RS19305 (OG906_19305) - 4344535..4345374 (+) 840 WP_329444432.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 49408.68 Da        Isoelectric Point: 8.4942

>NTDB_id=677969 OG906_RS19285 WP_267801316.1 4339024..4340442(-) (radA/sms) [Streptomyces sp. NBC_01426]
MAARTSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAAVPIGQVDVRTATARSTGVS
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADADHRTLYVTGEESASQVRLRADRIKALSDHLYLAAETDLSA
VLGHLDAVKPALLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVIEVADMGDALRVLPRGRSRTPAKEGAADRS

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=677969 OG906_RS19285 WP_267801316.1 4339024..4340442(-) (radA/sms) [Streptomyces sp. NBC_01426]
ATGGCAGCCCGCACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGTTGTACCGAGTGCGGCTGGACGACCGCGAA
ATGGCTCGGGCGGTGTCCCGAGTGCCAGGCGTGGGGCACCGTCGAGGAAATGGGCGCTCCCGCCGTGCGGACCACCGCGG
CGGGTCGGGTCTCGACCGCGGCCGTGCCGATCGGCCAGGTCGACGTCAGGACGGCGACCGCGCGCAGCACGGGCGTGAGC
GAGCTGGACCGGGTCCTCGGCGGCGGTCTCGTGCCCGGTGCGGTCGTGTTGTTGGCGGGCGAGCCGGGCGTGGGCAAGTC
GACGCTGCTGCTGGACGTCGCGGCCAAGGCGGCCGACGCCGACCACCGAACGCTGTACGTGACGGGCGAGGAGTCGGCGA
GTCAGGTGCGCCTGCGGGCGGACCGGATCAAGGCGCTCAGCGACCACCTGTACCTGGCCGCGGAGACCGATCTGTCGGCC
GTGCTCGGTCACCTCGACGCCGTGAAGCCCGCCCTGCTGATCCTGGACTCCGTACAGACCATCGCCTCGCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCGCTGATCCGGGCGTCCAAGGAACGCGGCATGTCCA
CGCTCCTCGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGCCCCCGGCTGCTGGAGCACCTGGTCGACGTCGTCCTG
AGCTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTGGTGCGCGGCGTGAAGAACCGGTACGGGACCACCGACGAGGTCGG
CTGCTTCGAACTCCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGTTGTTCCTGACCCGGCGCGCGGAGGCGG
TCCCCGGGACCTGTCTGACGGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCCGAGGTGCAGGCGCTGACGGTGGACTCG
CAGATCCCCTCGCCGCGCCGGACCACGTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACCGCGCTGGGCAAGCGGGACATCTACAGCGCCACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTGGCGCTGGCCTCCGCCGCGAGCGACGTGCCCCTCCCGAAGAACCTCGTCGCCATCGGGGAGGTC
GGTCTCGCGGGCGAGGTGCGCCGGGTGACGGGGGTCCAGCGGCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACGCACGC
GCTGGTGCCGAGCGACCCCGGCAAGGTGCCGGCGGGCATGAAGGTGATCGAGGTCGCGGACATGGGCGACGCGCTGCGGG
TCCTGCCGCGCGGGCGCTCGCGGACCCCGGCCAAGGAGGGCGCGGCCGACCGGTCGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

AAA domain (AAA_25)

(83-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

95.975

0.419
  radA Streptococcus mitis SK321

42.857

96.398

0.413
  radA Streptococcus mitis NCTC 12261

42.857

96.398

0.413
  radA Streptococcus pneumoniae TIGR4

42.92

95.763

0.411
  radA Streptococcus pneumoniae R6

42.92

95.763

0.411
  radA Streptococcus pneumoniae Rx1

42.92

95.763

0.411
  radA Streptococcus pneumoniae D39

42.92

95.763

0.411