Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | MXM90_RS11485 | Genome accession | NZ_CP095737 |
| Coordinates | 2264558..2265058 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain JNU 534 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2259615..2286905 | 2264558..2265058 | within | 0 |
Gene organization within MGE regions
Location: 2259615..2286905
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MXM90_RS11455 (MXM90_11455) | gnd | 2259615..2260520 (-) | 906 | WP_032398514.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| MXM90_RS11460 (MXM90_11460) | - | 2260623..2261513 (-) | 891 | WP_082225227.1 | IS982-like element ISLll1 family transposase | - |
| MXM90_RS11465 (MXM90_11465) | - | 2261891..2262739 (+) | 849 | WP_003131770.1 | MurR/RpiR family transcriptional regulator | - |
| MXM90_RS11470 (MXM90_11470) | - | 2262777..2263085 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| MXM90_RS11475 (MXM90_11475) | - | 2263167..2263940 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| MXM90_RS11480 (MXM90_11480) | rpsR | 2264140..2264385 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| MXM90_RS11485 (MXM90_11485) | ssb | 2264558..2265058 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| MXM90_RS11490 (MXM90_11490) | rpsF | 2265088..2265381 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| MXM90_RS11495 (MXM90_11495) | - | 2265573..2266427 (-) | 855 | WP_058221735.1 | undecaprenyl-diphosphate phosphatase | - |
| MXM90_RS11500 (MXM90_11500) | - | 2266950..2268416 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
| MXM90_RS11505 (MXM90_11505) | dnaX | 2268451..2270109 (-) | 1659 | WP_141347787.1 | DNA polymerase III subunit gamma/tau | - |
| MXM90_RS11510 (MXM90_11510) | - | 2270158..2270799 (-) | 642 | WP_003131958.1 | phosphotransferase | - |
| MXM90_RS11515 (MXM90_11515) | - | 2270830..2271318 (-) | 489 | WP_003131959.1 | GAF domain-containing protein | - |
| MXM90_RS11520 (MXM90_11520) | - | 2271402..2271674 (+) | 273 | WP_003131960.1 | chorismate mutase | - |
| MXM90_RS11525 (MXM90_11525) | - | 2271762..2272208 (-) | 447 | WP_003131961.1 | hypothetical protein | - |
| MXM90_RS11530 (MXM90_11530) | - | 2272498..2273682 (-) | 1185 | WP_141347788.1 | site-specific integrase | - |
| MXM90_RS11535 (MXM90_11535) | - | 2274180..2274374 (-) | 195 | WP_058225617.1 | hypothetical protein | - |
| MXM90_RS11540 (MXM90_11540) | - | 2275178..2275492 (-) | 315 | WP_011835952.1 | hypothetical protein | - |
| MXM90_RS11545 (MXM90_11545) | - | 2275987..2276244 (-) | 258 | WP_031286289.1 | hypothetical protein | - |
| MXM90_RS11550 (MXM90_11550) | - | 2276531..2276725 (-) | 195 | WP_058225605.1 | hypothetical protein | - |
| MXM90_RS11555 (MXM90_11555) | - | 2276739..2277290 (-) | 552 | WP_058225604.1 | hypothetical protein | - |
| MXM90_RS11560 (MXM90_11560) | - | 2277302..2277685 (-) | 384 | WP_058225603.1 | helix-turn-helix transcriptional regulator | - |
| MXM90_RS11565 (MXM90_11565) | - | 2277953..2278159 (+) | 207 | WP_023164689.1 | helix-turn-helix transcriptional regulator | - |
| MXM90_RS11570 (MXM90_11570) | - | 2278161..2278406 (+) | 246 | WP_081042515.1 | hypothetical protein | - |
| MXM90_RS11575 (MXM90_11575) | - | 2278435..2278641 (+) | 207 | WP_058225602.1 | hypothetical protein | - |
| MXM90_RS11580 (MXM90_11580) | - | 2278621..2279259 (-) | 639 | WP_141347797.1 | hypothetical protein | - |
| MXM90_RS11585 (MXM90_11585) | - | 2279334..2279519 (+) | 186 | WP_058225600.1 | helix-turn-helix transcriptional regulator | - |
| MXM90_RS11590 (MXM90_11590) | - | 2279638..2279832 (+) | 195 | WP_011677056.1 | DUF1655 domain-containing protein | - |
| MXM90_RS11595 (MXM90_11595) | - | 2279837..2280445 (+) | 609 | WP_162494570.1 | hypothetical protein | - |
| MXM90_RS11600 (MXM90_11600) | - | 2280442..2280723 (+) | 282 | WP_023164724.1 | hypothetical protein | - |
| MXM90_RS11605 (MXM90_11605) | - | 2280766..2281005 (+) | 240 | WP_011677052.1 | hypothetical protein | - |
| MXM90_RS11610 (MXM90_11610) | - | 2281002..2281256 (+) | 255 | WP_058225808.1 | hypothetical protein | - |
| MXM90_RS11615 (MXM90_11615) | - | 2281253..2281447 (+) | 195 | WP_021212083.1 | hypothetical protein | - |
| MXM90_RS11620 (MXM90_11620) | - | 2281434..2281763 (+) | 330 | WP_141347796.1 | hypothetical protein | - |
| MXM90_RS11625 (MXM90_11625) | - | 2281872..2282666 (+) | 795 | WP_058225810.1 | bifunctional DNA primase/polymerase | - |
| MXM90_RS11630 (MXM90_11630) | - | 2282677..2284305 (+) | 1629 | WP_058225811.1 | phage/plasmid primase, P4 family | - |
| MXM90_RS11635 (MXM90_11635) | - | 2284523..2284705 (+) | 183 | WP_003131978.1 | hypothetical protein | - |
| MXM90_RS11640 (MXM90_11640) | - | 2284732..2285340 (+) | 609 | WP_058225812.1 | hypothetical protein | - |
| MXM90_RS11645 (MXM90_11645) | - | 2285349..2285939 (+) | 591 | WP_058225813.1 | HK97 family phage prohead protease | - |
| MXM90_RS11650 (MXM90_11650) | - | 2286154..2286483 (+) | 330 | WP_058225814.1 | hypothetical protein | - |
| MXM90_RS11655 (MXM90_11655) | - | 2286585..2286905 (+) | 321 | WP_021165062.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=677948 MXM90_RS11485 WP_003131953.1 2264558..2265058(-) (ssb) [Lactococcus lactis strain JNU 534]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=677948 MXM90_RS11485 WP_003131953.1 2264558..2265058(-) (ssb) [Lactococcus lactis strain JNU 534]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |