Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OG406_RS32245 Genome accession   NZ_CP109499
Coordinates   7424827..7425897 (+) Length   356 a.a.
NCBI ID   WP_266612132.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01428     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7419827..7430897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG406_RS32215 (OG406_32220) - 7420358..7420903 (+) 546 WP_164369955.1 LemA family protein -
  OG406_RS32220 (OG406_32225) pdxS 7421057..7421977 (+) 921 WP_081223373.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  OG406_RS32225 (OG406_32230) pdxT 7421984..7422589 (+) 606 WP_266854441.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  OG406_RS32230 (OG406_32235) - 7422665..7423417 (+) 753 WP_164369957.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OG406_RS32235 (OG406_32240) ruvC 7423525..7424121 (+) 597 WP_081223370.1 crossover junction endodeoxyribonuclease RuvC -
  OG406_RS32240 (OG406_32245) ruvA 7424118..7424729 (+) 612 WP_164369958.1 Holliday junction branch migration protein RuvA -
  OG406_RS32245 (OG406_32250) ruvB 7424827..7425897 (+) 1071 WP_266612132.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OG406_RS32250 (OG406_32255) yajC 7426062..7426583 (+) 522 WP_081223367.1 preprotein translocase subunit YajC -
  OG406_RS32255 (OG406_32260) secD 7426725..7428485 (+) 1761 WP_329189113.1 protein translocase subunit SecD -
  OG406_RS32260 (OG406_32265) secF 7428487..7429605 (+) 1119 WP_164369961.1 protein translocase subunit SecF -
  OG406_RS32265 (OG406_32270) - 7429602..7430141 (+) 540 WP_266612125.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38095.55 Da        Isoelectric Point: 4.9875

>NTDB_id=677914 OG406_RS32245 WP_266612132.1 7424827..7425897(+) (ruvB) [Streptomyces sp. NBC_01428]
MNWDDTTDETAAERLVGSVADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYGPGELERVIHRSAGLLDLEIGTEGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGVITREIAAAALKVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLTPPRQSAGGKGQQDLFGA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=677914 OG406_RS32245 WP_266612132.1 7424827..7425897(+) (ruvB) [Streptomyces sp. NBC_01428]
ATGAACTGGGACGACACGACCGACGAAACCGCCGCGGAGCGGTTGGTGGGATCTGTCGCCGACCGTGAGGACCAGGCCGT
CGAGGCCGCCCTGCGCCCCAAGGACCTGGACGAGTTCATCGGACAGGAGAAGGTCCGCGAACAGCTCGACCTGGTCCTGC
GGGCCGCCCGCGCGCGGGGAGCCACCGCGGACCACGTGCTCCTGTCCGGCGCCCCCGGGCTCGGCAAGACCACCCTCTCC
ATGATCATCGCGGCCGAGATGGGCGCGCCCATCCGCATCACCAGCGGCCCCGCCATCCAGCACGCCGGAGACCTCGCCGC
GATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTGTTCCTGGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGGCCCGGCGCCACCGCCATCCCCCTGGAGCTG
CCCCCCTTCACCCTGGTCGGCGCCACCACGCGCGCGGGACTGCTCCCGCCGCCCCTGCGCGACCGCTTCGGCTTCACCGC
GCACATGGAGTTCTACGGACCCGGCGAGCTGGAACGCGTCATCCACCGCTCCGCCGGCCTCCTCGACCTGGAGATCGGCA
CGGAGGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACGCCCCGTATCGCCAACCGCCTGCTGCGCCGCGTGCGCGAC
TACGCCCAGGTCAAGGCCGACGGGGTCATCACCCGGGAGATCGCCGCGGCGGCCCTCAAGGTGTACGAGGTCGACGCGCG
GGGCCTGGACCGGCTCGACCGCGGTGTCCTCGAGGCGCTCCTCAAGCTGTTCGGCGGCGGTCCGGTCGGCCTGTCCACAC
TCGCCGTCGCCGTGGGGGAGGAGCGTGAGACCGTGGAGGAGGTCGCCGAGCCCTTCCTCGTACGGGAGGGACTCCTCGCC
CGTACTCCCCGTGGCCGGGTGGCGACACCCGCGGCATGGGCGCATCTCGGCCTCACGCCACCCCGCCAGTCCGCGGGCGG
AAAGGGACAACAGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)

RuvB AAA lid domain (AAA_lid_4)

(192-265)

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.545

92.697

0.506
  ruvB Synechocystis sp. PCC 6803

53.822

88.202

0.475
  ruvB Streptococcus pneumoniae TIGR4

53.333

88.483

0.472
  ruvB Streptococcus pneumoniae R6

53.333

88.483

0.472
  ruvB Streptococcus pneumoniae D39

53.333

88.483

0.472
  ruvB Helicobacter pylori 26695

50.629

89.326

0.452