Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HH1059_RS11640 Genome accession   NZ_AP017372
Coordinates   2538285..2538761 (-) Length   158 a.a.
NCBI ID   WP_096406178.1    Uniprot ID   A0A0X8X6B9
Organism   Halorhodospira halochloris strain DSM 1059     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2533285..2543761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH1059_RS11605 (HH1059_23150) - 2533553..2534077 (-) 525 WP_096406159.1 hypothetical protein -
  HH1059_RS11610 (HH1059_23160) modA 2534193..2534963 (+) 771 WP_096406162.1 molybdate ABC transporter substrate-binding protein -
  HH1059_RS11615 (HH1059_23170) modB 2534987..2535676 (+) 690 WP_096406165.1 molybdate ABC transporter permease subunit -
  HH1059_RS11620 (HH1059_23180) modC 2535676..2536743 (+) 1068 WP_096406167.1 molybdenum ABC transporter ATP-binding protein -
  HH1059_RS11625 (HH1059_23190) - 2536826..2537431 (+) 606 WP_096406170.1 nitrogen fixation protein NifQ -
  HH1059_RS11630 (HH1059_23200) vapB 2537529..2537759 (+) 231 WP_096406173.1 type II toxin-antitoxin system VapB family antitoxin -
  HH1059_RS11635 (HH1059_23210) vapC 2537759..2538160 (+) 402 WP_096406175.1 type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC -
  HH1059_RS11640 (HH1059_23220) ssb 2538285..2538761 (-) 477 WP_096406178.1 single-stranded DNA-binding protein Machinery gene
  HH1059_RS13555 (HH1059_23230) - 2538864..2539052 (-) 189 WP_162549535.1 hypothetical protein -
  HH1059_RS11645 (HH1059_23240) uvrA 2539185..2542034 (+) 2850 WP_096406181.1 excinuclease ABC subunit UvrA -
  HH1059_RS11650 (HH1059_23250) - 2542099..2542569 (+) 471 WP_162549536.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17312.03 Da        Isoelectric Point: 4.7045

>NTDB_id=67789 HH1059_RS11640 WP_096406178.1 2538285..2538761(-) (ssb) [Halorhodospira halochloris strain DSM 1059]
MARGVNKVILIGNLGRDPEVRYTASGSAVANVSLATTDTWRDRQTGEQQERTEWHRVVFFNRLGEIVGEYLRKGSKVYVE
GRLQTRKWQDQNGQDRYTTEIIASEMQMLDSRGAGADGQMGGERPGQGAPAAAGQGGSQGQSSMPEDSGEFVDDEIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=67789 HH1059_RS11640 WP_096406178.1 2538285..2538761(-) (ssb) [Halorhodospira halochloris strain DSM 1059]
ATGGCAAGGGGCGTAAATAAAGTCATCTTGATCGGCAATCTGGGAAGGGATCCCGAGGTTCGTTATACCGCCTCAGGCAG
TGCGGTGGCGAATGTCAGCTTAGCCACTACGGATACTTGGCGGGATCGGCAAACTGGCGAACAGCAGGAGCGGACTGAAT
GGCACCGGGTGGTTTTTTTCAACCGGCTCGGTGAAATAGTCGGCGAGTATCTGCGCAAGGGCAGCAAGGTTTACGTCGAG
GGGCGGCTACAGACGCGCAAGTGGCAGGATCAGAATGGGCAGGACCGCTATACGACGGAGATAATCGCTAGCGAGATGCA
GATGCTCGATAGCCGCGGTGCCGGCGCTGATGGCCAAATGGGCGGTGAACGCCCGGGTCAGGGTGCCCCCGCTGCGGCTG
GACAGGGCGGCAGTCAGGGACAGAGCTCTATGCCGGAGGACTCCGGAGAGTTTGTTGATGATGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8X6B9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.25

100

0.57
  ssb Neisseria meningitidis MC58

43.353

100

0.475
  ssb Neisseria gonorrhoeae MS11

43.353

100

0.475
  ssb Glaesserella parasuis strain SC1401

65.789

72.152

0.475

Multiple sequence alignment