Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MX663_RS13410 Genome accession   NZ_CP095736
Coordinates   2561659..2561994 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain N4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2556659..2566994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS13390 (MX663_13390) gcvT 2557252..2558340 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  MX663_RS13395 (MX663_13395) yqhH 2558781..2560454 (+) 1674 WP_003230203.1 SNF2-related protein -
  MX663_RS13400 (MX663_13400) yqhG 2560475..2561269 (+) 795 WP_003230200.1 YqhG family protein -
  MX663_RS13405 (MX663_13405) sinI 2561452..2561625 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  MX663_RS13410 (MX663_13410) sinR 2561659..2561994 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MX663_RS13415 (MX663_13415) tasA 2562087..2562872 (-) 786 WP_161476870.1 biofilm matrix protein TasA -
  MX663_RS13420 (MX663_13420) sipW 2562936..2563508 (-) 573 WP_003230181.1 signal peptidase I -
  MX663_RS13425 (MX663_13425) tapA 2563492..2564253 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  MX663_RS13430 (MX663_13430) yqzG 2564525..2564851 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MX663_RS13435 (MX663_13435) spoIIT 2564893..2565072 (-) 180 WP_029726723.1 YqzE family protein -
  MX663_RS13440 (MX663_13440) comGG 2565144..2565518 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  MX663_RS13445 (MX663_13445) comGF 2565519..2565902 (-) 384 WP_080529536.1 ComG operon protein ComGF Machinery gene
  MX663_RS13450 (MX663_13450) comGE 2565928..2566275 (-) 348 WP_080529537.1 ComG operon protein 5 Machinery gene
  MX663_RS13455 (MX663_13455) comGD 2566259..2566690 (-) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  MX663_RS13460 (MX663_13460) comGC 2566680..2566976 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=677865 MX663_RS13410 WP_003226345.1 2561659..2561994(+) (sinR) [Bacillus subtilis strain N4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=677865 MX663_RS13410 WP_003226345.1 2561659..2561994(+) (sinR) [Bacillus subtilis strain N4]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1