Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   MX663_RS13445 Genome accession   NZ_CP095736
Coordinates   2565519..2565902 (-) Length   127 a.a.
NCBI ID   WP_080529536.1    Uniprot ID   -
Organism   Bacillus subtilis strain N4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2560519..2570902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS13405 (MX663_13405) sinI 2561452..2561625 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  MX663_RS13410 (MX663_13410) sinR 2561659..2561994 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MX663_RS13415 (MX663_13415) tasA 2562087..2562872 (-) 786 WP_161476870.1 biofilm matrix protein TasA -
  MX663_RS13420 (MX663_13420) sipW 2562936..2563508 (-) 573 WP_003230181.1 signal peptidase I -
  MX663_RS13425 (MX663_13425) tapA 2563492..2564253 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  MX663_RS13430 (MX663_13430) yqzG 2564525..2564851 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MX663_RS13435 (MX663_13435) spoIIT 2564893..2565072 (-) 180 WP_029726723.1 YqzE family protein -
  MX663_RS13440 (MX663_13440) comGG 2565144..2565518 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  MX663_RS13445 (MX663_13445) comGF 2565519..2565902 (-) 384 WP_080529536.1 ComG operon protein ComGF Machinery gene
  MX663_RS13450 (MX663_13450) comGE 2565928..2566275 (-) 348 WP_080529537.1 ComG operon protein 5 Machinery gene
  MX663_RS13455 (MX663_13455) comGD 2566259..2566690 (-) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  MX663_RS13460 (MX663_13460) comGC 2566680..2566976 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  MX663_RS13465 (MX663_13465) comGB 2566990..2568027 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  MX663_RS13470 (MX663_13470) comGA 2568014..2569084 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  MX663_RS13475 (MX663_13475) corA 2569494..2570447 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14414.53 Da        Isoelectric Point: 6.2135

>NTDB_id=677867 MX663_RS13445 WP_080529536.1 2565519..2565902(-) (comGF) [Bacillus subtilis strain N4]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGR

Nucleotide


Download         Length: 384 bp        

>NTDB_id=677867 MX663_RS13445 WP_080529536.1 2565519..2565902(-) (comGF) [Bacillus subtilis strain N4]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCTATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGAGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

99.206

99.213

0.984