Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG406_RS11755 Genome accession   NZ_CP109499
Coordinates   2733176..2733952 (+) Length   258 a.a.
NCBI ID   WP_081219793.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01428     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2728176..2738952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG406_RS11740 (OG406_11745) - 2728335..2728868 (+) 534 WP_329185632.1 TerD family protein -
  OG406_RS11745 (OG406_11750) - 2729039..2731942 (-) 2904 WP_267048708.1 vitamin B12-dependent ribonucleotide reductase -
  OG406_RS11750 (OG406_11755) nrdR 2732105..2732656 (-) 552 WP_164375222.1 transcriptional regulator NrdR -
  OG406_RS11755 (OG406_11760) dinR/lexA 2733176..2733952 (+) 777 WP_081219793.1 transcriptional repressor LexA Regulator
  OG406_RS11760 (OG406_11765) - 2734176..2736242 (-) 2067 WP_329185634.1 ATP-dependent DNA helicase -
  OG406_RS11765 (OG406_11770) - 2736433..2737140 (-) 708 WP_329190756.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27949.65 Da        Isoelectric Point: 7.4755

>NTDB_id=677864 OG406_RS11755 WP_081219793.1 2733176..2733952(+) (dinR/lexA) [Streptomyces sp. NBC_01428]
MTTTADSATITAQDRSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=677864 OG406_RS11755 WP_081219793.1 2733176..2733952(+) (dinR/lexA) [Streptomyces sp. NBC_01428]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCATGAGGGGCCCAAGCGCTCCCTGCCTGGGCGACCTCCAGGCATCCGAGCCGACAGCTCGGGACTCA
CGGACCGGCAACGCCGGGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGCGGTTACCCGCCGTCGATGCGGGAGATC
GGACAGGCCGTCGGCCTTTCCAGCACCTCCTCGGTCGCGCATCAGCTCATGGCACTGGAGCGCAAGGGTTTCCTTCGCCG
GGACCCGCACCGCCCGCGCGCCTACGAGGTGCGGGGCTCCGACCAGTCGTCGGTGCAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTACCGCTCGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGACGTG
TTCCCGCTCCCCCGCCAGCTGGTGGGCGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGAGACTCGATGATCGAAGCCGC
CATCTGTGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTGGACG
GCGAGGCCACGGTGAAGCGCTTCAAGCGGGAGGACGGCCACGTCTGGCTGCTGCCGCACAACTCCGCCTACCAGCCGATC
CCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372