Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LGT41_RS12165 Genome accession   NZ_CP095732
Coordinates   2441806..2442288 (-) Length   160 a.a.
NCBI ID   WP_274127150.1    Uniprot ID   -
Organism   Abyssibius alkaniclasticus strain 960558     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2436806..2447288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGT41_RS12150 (LGT41_0012130) trmFO 2436837..2438177 (-) 1341 WP_337993014.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LGT41_RS12155 (LGT41_0012135) - 2438252..2438656 (-) 405 WP_274127149.1 DoxX family protein -
  LGT41_RS12160 (LGT41_0012140) gyrA 2438792..2441434 (-) 2643 WP_420720215.1 DNA gyrase subunit A -
  LGT41_RS12165 (LGT41_0012145) ssb 2441806..2442288 (-) 483 WP_274127150.1 single-stranded DNA-binding protein Machinery gene
  LGT41_RS12170 (LGT41_0012150) - 2442456..2443178 (+) 723 WP_274127151.1 lytic transglycosylase domain-containing protein -
  LGT41_RS12175 (LGT41_0012155) uvrA 2443293..2446127 (+) 2835 WP_274127152.1 excinuclease ABC subunit UvrA -
  LGT41_RS12180 (LGT41_0012160) - 2446124..2447107 (-) 984 WP_274127153.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 16998.49 Da        Isoelectric Point: 4.9752

>NTDB_id=677777 LGT41_RS12165 WP_274127150.1 2441806..2442288(-) (ssb) [Abyssibius alkaniclasticus strain 960558]
MAGSVNKVILVGNLGADPEVRTFQNGGRVVNLRVATSETWRDKNSGERQERTQWHQVAIFNEPVGKIAEQYLRKGSKVYL
EGQLETRKWQDQSGADRYTTEVVLRPFTGNMTLLDGRGEGGGGNGGSSYGGENDGGYGGSGSGGANQGGGGSNLDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=677777 LGT41_RS12165 WP_274127150.1 2441806..2442288(-) (ssb) [Abyssibius alkaniclasticus strain 960558]
ATGGCTGGCAGCGTAAACAAGGTAATTCTGGTTGGAAATCTGGGGGCAGACCCGGAAGTGCGGACCTTCCAGAACGGCGG
GCGGGTGGTAAACCTGCGCGTGGCCACGTCTGAAACATGGCGCGACAAGAATTCGGGCGAGCGGCAGGAGCGCACGCAAT
GGCACCAGGTGGCCATTTTCAACGAGCCTGTGGGCAAGATCGCCGAGCAGTATTTGCGCAAAGGCTCCAAGGTTTACCTT
GAAGGGCAGTTGGAAACGCGCAAATGGCAAGACCAAAGCGGCGCCGACCGGTATACGACCGAAGTCGTGCTGCGCCCCTT
CACCGGCAATATGACTTTGCTGGATGGCCGTGGCGAAGGCGGTGGTGGAAACGGCGGCTCCAGCTATGGCGGCGAGAATG
ATGGCGGCTATGGCGGCTCTGGCAGCGGCGGTGCAAACCAGGGCGGTGGCGGCAGCAATCTGGACGATGATATTCCGTTC
TAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.569
  ssb Vibrio cholerae strain A1552

60.169

73.75

0.444
  ssb Neisseria meningitidis MC58

38.547

100

0.431
  ssb Neisseria gonorrhoeae MS11

46.715

85.625

0.4