Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MWN52_RS13890 Genome accession   NZ_CP095475
Coordinates   3141452..3142510 (-) Length   352 a.a.
NCBI ID   WP_130524892.1    Uniprot ID   A0A4Q8M1T4
Organism   Pseudoxanthomonas winnipegensis strain ZSY-33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3136452..3147510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWN52_RS13870 (MWN52_13885) - 3137610..3139520 (-) 1911 WP_286575084.1 type IV pilus secretin PilQ -
  MWN52_RS13875 (MWN52_13890) - 3139535..3140074 (-) 540 WP_286575085.1 pilus assembly protein PilP -
  MWN52_RS13880 (MWN52_13895) pilO 3140071..3140742 (-) 672 WP_130535259.1 type 4a pilus biogenesis protein PilO -
  MWN52_RS13885 (MWN52_13900) - 3140739..3141452 (-) 714 WP_286575087.1 PilN domain-containing protein -
  MWN52_RS13890 (MWN52_13905) comM 3141452..3142510 (-) 1059 WP_130524892.1 pilus assembly protein PilM Machinery gene
  MWN52_RS13895 (MWN52_13910) - 3142736..3145204 (+) 2469 WP_286575089.1 penicillin-binding protein 1A -
  MWN52_RS13900 (MWN52_13915) - 3145326..3145970 (+) 645 WP_286575090.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37701.40 Da        Isoelectric Point: 4.3674

>NTDB_id=677122 MWN52_RS13890 WP_130524892.1 3141452..3142510(-) (comM) [Pseudoxanthomonas winnipegensis strain ZSY-33]
MGLIPKSQSALLGVDISSTAVKLLQLTRVGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRAGTKVKNAAAA
VAGSAVITKIIPMPADLDEDDLEAQIELEAVNYIPYPIEEVNLDFEVLGPMPGNPEMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALLAGELPVPHDGVVALVDIGATMTTLNVIRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEIEVLEPFKEATVQQVSRLLQFFYAGSEFNRVDQIVLAGGCAALAGLPEMVEEQLGVPTIVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=677122 MWN52_RS13890 WP_130524892.1 3141452..3142510(-) (comM) [Pseudoxanthomonas winnipegensis strain ZSY-33]
GTGGGGCTCATCCCAAAAAGCCAATCTGCGCTGCTCGGCGTGGATATCAGCTCGACTGCGGTCAAGCTGCTCCAGCTCAC
GCGCGTGGGAAACCGCTTCCGCGTGGAGCATTACGCCGTCGAGCCGCTGCCTCCCAACGCGGTGGTCGAGAAGAACATCG
TCGAAGTCGAGGCGGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGCGCCGGCACCAAGGTCAAGAACGCCGCCGCGGCC
GTGGCCGGTTCGGCGGTGATCACCAAGATCATTCCCATGCCCGCCGATCTGGACGAGGACGACCTGGAAGCCCAGATCGA
GCTCGAGGCGGTCAACTACATCCCGTATCCGATCGAGGAAGTGAATCTGGACTTCGAGGTCCTGGGCCCCATGCCCGGCA
ACCCGGAGATGGTCCAGGTCCTGCTGGCCGCCTCGCGTTCGGAGAACGTCGAGCTGCGCCAGTCCGCGCTTGAGCTGGGC
GGGCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGCTGGCGGGCGAGCTGCCGGT
CCCGCATGACGGCGTTGTCGCGCTGGTGGACATCGGCGCGACCATGACCACGCTCAACGTCATCCGCAGCGGCCGCAGCC
TCTACAGCCGCGAGCAGGTCTTCGGCGGCAAACAGCTGACCGACGAGGTGATGCGCCGCTACGGGCTCACCTACGAGGAG
GCCGGCATGGCCAAGCGCCAGGGCGGCCTGCCGGAAAGCTACGAGATCGAAGTGCTCGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGGTCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAATTCAACCGCGTCGACCAGATCGTGTTGGCCGGCG
GCTGCGCCGCCCTGGCCGGCCTGCCGGAAATGGTCGAGGAGCAGCTCGGTGTGCCGACCATCGTGGCCAATCCGCTGGCG
CAGATGACGCTGGGTCCGAAGGTGCAGGCGCATGCGCTGGCCCAGGACGCGCCGGCGTTGATGATCGCCACCGGCCTGGC
GCTGCGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q8M1T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

45.869

99.716

0.457