Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MWH18_RS19950 Genome accession   NZ_CP095407
Coordinates   4047738..4048871 (+) Length   377 a.a.
NCBI ID   WP_126117781.1    Uniprot ID   A0AAE9S8J2
Organism   Acinetobacter pittii strain TCM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 4042738..4053871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWH18_RS19925 (MWH18_19920) - 4042994..4043200 (-) 207 WP_005072046.1 hypothetical protein -
  MWH18_RS19930 (MWH18_19925) oprC 4043254..4045368 (-) 2115 WP_005072043.1 TonB-dependent copper receptor -
  MWH18_RS19935 (MWH18_19930) - 4045441..4045866 (-) 426 WP_032070742.1 DUF2946 family protein -
  MWH18_RS19940 (MWH18_19935) def 4045910..4046440 (-) 531 WP_002114101.1 peptide deformylase -
  MWH18_RS19945 (MWH18_19940) tsaP 4046563..4047717 (+) 1155 WP_032070741.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MWH18_RS19950 (MWH18_19945) dprA 4047738..4048871 (+) 1134 WP_126117781.1 DNA-processing protein DprA Machinery gene
  MWH18_RS19955 (MWH18_19950) yrdC 4048923..4049492 (+) 570 WP_005072030.1 Sua5/YciO/YrdC/YwlC family protein -
  MWH18_RS19960 (MWH18_19955) - 4049885..4050805 (-) 921 WP_002114137.1 DMT family transporter -
  MWH18_RS19965 (MWH18_19960) - 4050910..4051563 (-) 654 WP_080631244.1 TetR/AcrR family transcriptional regulator -
  MWH18_RS19970 (MWH18_19965) nepI 4051699..4052913 (+) 1215 WP_005072024.1 MFS transporter -
  MWH18_RS19975 (MWH18_19970) - 4052935..4053699 (+) 765 WP_005072018.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41864.32 Da        Isoelectric Point: 6.4551

>NTDB_id=676784 MWH18_RS19950 WP_126117781.1 4047738..4048871(+) (dprA) [Acinetobacter pittii strain TCM]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQDAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=676784 MWH18_RS19950 WP_126117781.1 4047738..4048871(+) (dprA) [Acinetobacter pittii strain TCM]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTATCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGCCAAGCTCAAGCTTTGTTGCAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGATGCTTATGATTTTGCCTACTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGC
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCGATTATTACTGAATTTTTGCCTGGAACAC
CCCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACA
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCTGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCTACTCAATGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAGTACTCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

91.247

100

0.912

  dprA Acinetobacter baumannii strain A118

90.716

100

0.907

  dprA Acinetobacter baylyi ADP1

71.129

100

0.719

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387