Detailed information NTG0676371

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MRK42_RS19245
• Genome accession: NZ_CP095328
• Coordinates: 4193773..4194648 (+)
• Length: 291 a.a.
• NCBI ID: WP_342013424.1
• Uniprot ID: A0AAU6T818
• Organism: Aeromonas sp. 19NY04SH05-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4188773..4199648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MRK42_RS19225 (MRK42_19170)	nadC	4188889..4189746 (+)	858	WP_354688548.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MRK42_RS19230 (MRK42_19175)	-	4190121..4190531 (+)	411	WP_354688549.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
MRK42_RS19235 (MRK42_19180)	pilB	4190535..4192241 (+)	1707	WP_354688550.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
MRK42_RS19240 (MRK42_19185)	pilC	4192465..4193706 (+)	1242	WP_026456598.1	type II secretion system F family protein	Machinery gene
MRK42_RS19245 (MRK42_19190)	pilD	4193773..4194648 (+)	876	WP_342013424.1	A24 family peptidase	Machinery gene
MRK42_RS19250 (MRK42_19195)	coaE	4194652..4195266 (+)	615	WP_354688551.1	dephospho-CoA kinase	-
MRK42_RS19255 (MRK42_19200)	zapD	4195304..4196026 (+)	723	WP_354688552.1	cell division protein ZapD	-
MRK42_RS19260 (MRK42_19205)	yacG	4196036..4196230 (+)	195	WP_026457308.1	DNA gyrase inhibitor YacG	-
MRK42_RS19265 (MRK42_19210)	mutT	4196293..4196688 (-)	396	WP_026457309.1	8-oxo-dGTP diphosphatase MutT	-
MRK42_RS19270 (MRK42_19215)	secA	4196779..4199499 (-)	2721	WP_124238853.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32296.67 Da
• Isoelectric Point: 7.4106

>NTDB_id=676371 MRK42_RS19245 WP_342013424.1 4193773..4194648(+) (pilD) [Aeromonas sp. 19NY04SH05-1]
MTLLIELAHGLPWLYLSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFETQTPNSDPAERYNLMVPRSACPHCGH
AITAVENIPLLSWLWLRGRCRECRAPISARYPLVELLTALLSVAVATILTPGWGVLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPIILLLSS
LVGAIIGITLIALRKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLAMVL

Nucleotide

• Length: 876 bp

>NTDB_id=676371 MRK42_RS19245 WP_342013424.1 4193773..4194648(+) (pilD) [Aeromonas sp. 19NY04SH05-1]
ATGACACTTCTTATCGAGCTGGCGCACGGCTTGCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTCTCTCTGATGATCGG
CAGCTTCCTCAACGTGGTGATCCACCGCCTCCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCACGGCTACTTCG
AGACACAAACGCCAAACAGCGATCCGGCTGAACGCTACAACCTGATGGTGCCGCGTTCCGCCTGCCCCCACTGCGGCCAT
GCCATCACGGCCGTCGAGAATATCCCGCTCCTGAGCTGGCTCTGGCTCAGGGGCCGTTGCCGGGAGTGTCGGGCCCCCAT
CTCGGCCCGTTATCCCCTGGTGGAATTGCTGACAGCCCTGCTCTCGGTAGCGGTAGCCACGATCCTGACGCCGGGCTGGG
GTGTGCTGGCAGCCCTGCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCCGAC
CAGCTTACCCTGCCGCTGCTGTGGGGAGGGTTGCTGTTCAATCTGGCGGGGGGATTCGTTCCGCTGGCCGACGCAGTGAT
CGGGGCCATGGCCGGCTATCTGGTACTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGAT
ATGGCGACTTCAAGCTGCTGGCGGCACTCGGTGCCTGGCTGGGCTGGCAGTCCCTGCCCATCATACTGCTGCTCTCCTCC
CTGGTGGGCGCCATCATCGGCATCACGCTGATCGCGCTGCGCAAGCACCATCAGGGCAAGCCCATTCCCTTTGGCCCCTA
TCTGGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCGCAATGGTGCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.625	0.605
pilD	Vibrio campbellii strain DS40M4	56.597	98.969	0.56
pilD	Acinetobacter baumannii D1279779	53.571	96.22	0.515
pilD	Acinetobacter nosocomialis M2	53.571	96.22	0.515
pilD	Neisseria gonorrhoeae MS11	48.689	91.753	0.447