Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MRN59_RS00080 Genome accession   NZ_CP095314
Coordinates   11676..12194 (+) Length   172 a.a.
NCBI ID   WP_041636241.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19MO06SA05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6676..17194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRN59_RS00045 (MRN59_00045) - 7069..7830 (+) 762 WP_015912450.1 AAA family ATPase -
  MRN59_RS00050 (MRN59_00050) - 7823..8686 (+) 864 WP_133445223.1 ParB/RepB/Spo0J family partition protein -
  MRN59_RS00055 (MRN59_00055) - 8687..9574 (+) 888 WP_133433299.1 mechanosensitive ion channel family protein -
  MRN59_RS00060 (MRN59_00060) - 9576..9764 (+) 189 WP_133445222.1 DUF951 domain-containing protein -
  MRN59_RS00065 (MRN59_00065) ychF 9783..10883 (+) 1101 WP_015912447.1 redox-regulated ATPase YchF -
  MRN59_RS00070 (MRN59_00070) - 10907..11224 (+) 318 WP_041636242.1 hypothetical protein -
  MRN59_RS00075 (MRN59_00075) rpsF 11361..11651 (+) 291 WP_099482228.1 30S ribosomal protein S6 -
  MRN59_RS00080 (MRN59_00080) ssbA 11676..12194 (+) 519 WP_041636241.1 single-stranded DNA-binding protein Machinery gene
  MRN59_RS00085 (MRN59_00085) rpsR 12227..12469 (+) 243 WP_041636240.1 30S ribosomal protein S18 -
  MRN59_RS00090 (MRN59_00090) - 12688..13302 (-) 615 WP_165980511.1 GNAT family N-acetyltransferase -
  MRN59_RS00095 (MRN59_00095) - 13403..14422 (-) 1020 WP_133445220.1 DUF2382 domain-containing protein -
  MRN59_RS00100 (MRN59_00100) xpt 14926..15510 (+) 585 WP_015912443.1 xanthine phosphoribosyltransferase -
  MRN59_RS00105 (MRN59_00105) - 15510..16778 (+) 1269 WP_133445219.1 nucleobase:cation symporter-2 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.61 Da        Isoelectric Point: 4.8835

>NTDB_id=676314 MRN59_RS00080 WP_041636241.1 11676..12194(+) (ssbA) [Macrococcoides caseolyticum strain 19MO06SA05]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKNTNQSRTNSPSDDYSSYDQGSYGQTQGQNQNYQSSNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=676314 MRN59_RS00080 WP_041636241.1 11676..12194(+) (ssbA) [Macrococcoides caseolyticum strain 19MO06SA05]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTTACTTTAGCAGTAAATAGAACATTTACTAATGCACAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTTAATAATTTCTTGCATAAAGGTAGTTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAAAGTATATGTTACTGAGGTCGTTTGTGATTCAGTTCAATTCCTTGAACCGAAGAA
CACTAATCAATCTCGTACAAACAGTCCGTCAGATGACTATTCTAGCTATGACCAAGGAAGTTATGGTCAGACACAAGGCC
AGAATCAAAACTATCAGTCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

53.977

100

0.552
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366