Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG329_RS30635 Genome accession   NZ_CP109422
Coordinates   6820088..6821968 (+) Length   626 a.a.
NCBI ID   WP_405799627.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01506     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6815088..6826968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG329_RS30610 (OG329_30595) - 6815508..6816029 (-) 522 WP_405799622.1 hypothetical protein -
  OG329_RS30615 (OG329_30600) - 6816330..6817103 (-) 774 WP_405799623.1 aminotransferase class IV -
  OG329_RS30620 (OG329_30605) soxR 6817123..6817578 (-) 456 WP_405799624.1 redox-sensitive transcriptional activator SoxR -
  OG329_RS30625 (OG329_30610) - 6817632..6818315 (+) 684 WP_405799625.1 NADPH-dependent FMN reductase -
  OG329_RS30630 (OG329_30615) rcrP 6818328..6820091 (+) 1764 WP_405799626.1 ABC transporter ATP-binding protein Regulator
  OG329_RS30635 (OG329_30620) rcrQ 6820088..6821968 (+) 1881 WP_405799627.1 ABC transporter ATP-binding protein Regulator
  OG329_RS30640 (OG329_30625) cutA 6821989..6822327 (+) 339 WP_405799628.1 divalent-cation tolerance protein CutA -
  OG329_RS30645 (OG329_30630) - 6822711..6823664 (-) 954 WP_405802104.1 IS481 family transposase -
  OG329_RS30650 (OG329_30635) - 6823765..6825864 (-) 2100 WP_405799629.1 molybdopterin oxidoreductase family protein -
  OG329_RS30655 (OG329_30640) - 6825966..6826727 (-) 762 WP_405799630.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 626 a.a.        Molecular weight: 67176.02 Da        Isoelectric Point: 6.2675

>NTDB_id=676037 OG329_RS30635 WP_405799627.1 6820088..6821968(+) (rcrQ) [Streptomyces sp. NBC_01506]
MSAARERQAPERRGPAAQRGPGMTATPSLERSLDFRRSGVRLLRTVTPGAAERTLLLAILAAGTAAVGLSVVLPKILGHA
TDLVVSGARTPEGVDFREVARSLGLVLALITGSAGLTWLQIRLTAELVQRAGHQLRERAQRKLSRLPLAYFDKQPRGEVL
SRTTNDIDNITQTLQQALAQIMRALLTLVGVLAMMVWISPLLALVVLVTVPFSVLGAVLIGKRAQPQFVRQWAETGRLNG
HVEEMYTGHAEVVVFGRKDDAVRTFEEHNEALYASSFRAQFISGFIQPALTFVGNLNYVLIAVVGGLRVASGTLSIGDVQ
AFVQYSYEFNGPVTQIASMANLLQSGVASAERVFDLLDAEEESAEPVGRTTGPAKTSAKTSGRVSFEKVAFSYEKAEPLI
EDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIATMSRQELRSGIGMVLQDTWLFGGTIADNIAY
GVPGDVPRERVVEAAMATHADRFIRTLPDGYDTVMDEDGGGLSAGEKQLLTIARAFLVEPAILVLDEATSSVDTRTEVLI
QRAMSSLREGRTSFVIAHRLSTIRDADVILVMEAGHIVEQGTHDGLLASGGAYARLYASQFAAAVA

Nucleotide


Download         Length: 1881 bp        

>NTDB_id=676037 OG329_RS30635 WP_405799627.1 6820088..6821968(+) (rcrQ) [Streptomyces sp. NBC_01506]
ATGAGTGCCGCCCGAGAACGCCAGGCTCCCGAACGCCGGGGCCCCGCCGCGCAGCGCGGTCCCGGCATGACCGCCACACC
TTCCCTCGAACGCTCCCTGGACTTCCGCCGCTCCGGTGTGCGGCTGCTGCGCACGGTCACTCCGGGAGCCGCCGAACGCA
CCCTGCTCCTCGCGATCCTCGCCGCCGGTACGGCAGCGGTGGGCCTCTCCGTCGTCCTCCCGAAGATCCTCGGCCACGCC
ACCGACCTCGTCGTCTCCGGCGCGCGGACGCCCGAGGGCGTCGACTTCCGCGAGGTGGCCCGCAGCCTCGGTCTCGTACT
CGCCCTGATCACCGGCTCCGCCGGGCTCACCTGGCTACAGATCCGGCTCACCGCCGAACTCGTCCAGCGGGCCGGCCACC
AACTGCGCGAACGGGCGCAGCGCAAACTCTCGCGGCTGCCCCTGGCGTACTTCGACAAGCAGCCGCGCGGCGAAGTCCTC
TCCCGCACCACCAACGACATCGACAACATCACCCAGACCCTGCAACAGGCCCTCGCCCAGATCATGCGAGCGCTGCTCAC
CCTCGTCGGCGTGCTGGCGATGATGGTGTGGATCTCGCCGCTGCTGGCCCTCGTGGTGCTGGTGACGGTGCCGTTCTCGG
TACTCGGAGCCGTACTGATCGGGAAGCGGGCACAGCCGCAGTTCGTCAGACAGTGGGCCGAGACCGGCAGGCTCAACGGG
CACGTCGAGGAGATGTACACGGGCCACGCGGAGGTGGTGGTGTTCGGCCGCAAGGACGACGCCGTACGCACCTTCGAGGA
GCACAACGAGGCGCTGTACGCGTCGAGTTTCCGGGCCCAGTTCATCTCCGGCTTCATCCAGCCGGCCCTGACCTTCGTCG
GGAATCTCAACTACGTGCTCATCGCGGTCGTCGGCGGGCTGCGCGTCGCGTCGGGGACACTGTCCATCGGTGACGTGCAG
GCGTTCGTCCAGTACTCGTACGAATTCAACGGCCCGGTCACCCAGATCGCGTCCATGGCGAACCTCCTCCAGTCGGGTGT
CGCGTCGGCGGAGCGTGTCTTCGATCTGCTGGACGCGGAGGAGGAGTCGGCGGAGCCGGTGGGAAGGACCACCGGGCCCG
CCAAGACCTCCGCCAAGACCTCGGGCCGGGTCTCGTTCGAGAAGGTCGCCTTCAGCTACGAGAAGGCGGAACCGCTCATC
GAGGACCTGTCGCTGTCCGTCGAACCCGGCCAGACCGTCGCGATCGTCGGCCCCACCGGCGCGGGCAAGACCACCCTCGT
CAACCTGCTGATGCGCTTCTACGAGGTCACCGGCGGCCGGATCACCCTCGACGGCGTCGACATCGCCACGATGTCCCGGC
AGGAGCTGCGTTCGGGGATCGGCATGGTCCTCCAGGACACCTGGCTGTTCGGCGGCACGATCGCCGACAACATCGCGTAC
GGCGTCCCCGGCGACGTACCGCGCGAACGCGTGGTCGAGGCGGCGATGGCGACCCACGCCGACCGTTTCATCCGTACGCT
GCCCGACGGCTACGACACCGTCATGGACGAGGACGGCGGCGGGCTCAGCGCGGGCGAGAAGCAACTGCTCACCATCGCAC
GGGCGTTCCTGGTCGAACCGGCCATCCTGGTGCTGGACGAGGCGACCAGCTCCGTCGACACCCGTACCGAAGTCCTCATC
CAGCGCGCCATGTCCTCGCTGCGCGAGGGCCGCACAAGCTTCGTCATCGCGCACCGGCTGTCCACGATCAGGGACGCGGA
CGTGATCCTGGTGATGGAGGCGGGCCATATCGTGGAACAGGGCACCCACGACGGACTCCTGGCGTCCGGGGGCGCCTACG
CCCGCCTCTACGCCTCGCAGTTCGCGGCGGCGGTGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(401-550)

ABC transporter transmembrane region (ABC_membrane)

(58-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.95

89.776

0.395