Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUU77_RS05175 Genome accession   NZ_CP095187
Coordinates   1119232..1119720 (+) Length   162 a.a.
NCBI ID   WP_187573221.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. F37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1114232..1124720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU77_RS05155 (MUU77_05155) murL 1114470..1115825 (+) 1356 WP_245092327.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  MUU77_RS05160 (MUU77_05160) murD 1115806..1117209 (+) 1404 WP_245092329.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  MUU77_RS05165 (MUU77_05165) - 1117284..1118066 (+) 783 WP_245092331.1 dienelactone hydrolase family protein -
  MUU77_RS05170 (MUU77_05170) - 1118080..1119078 (-) 999 WP_245092333.1 polyprenyl synthetase family protein -
  MUU77_RS05175 (MUU77_05175) ssb 1119232..1119720 (+) 489 WP_187573221.1 single-stranded DNA-binding protein Machinery gene
  MUU77_RS05180 (MUU77_05180) rfbB 1119762..1120817 (+) 1056 WP_245092335.1 dTDP-glucose 4,6-dehydratase -
  MUU77_RS05185 (MUU77_05185) rfbA 1120828..1121715 (+) 888 WP_245092337.1 glucose-1-phosphate thymidylyltransferase RfbA -
  MUU77_RS05190 (MUU77_05190) rfbC 1121712..1122269 (+) 558 WP_245092339.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  MUU77_RS05195 (MUU77_05195) rfbD 1122266..1123153 (+) 888 WP_245092341.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17528.35 Da        Isoelectric Point: 5.3095

>NTDB_id=676037 MUU77_RS05175 WP_187573221.1 1119232..1119720(+) (ssb) [Pseudoxanthomonas sp. F37]
MARGINKVILVGNLGNDPETRYTQGGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGQEKYSTDIIADEMQMLGGREGGGGGAGGDRPARAPRQDYGNQGGGQRRPAPAPASQPAPMDDFADDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=676037 MUU77_RS05175 WP_187573221.1 1119232..1119720(+) (ssb) [Pseudoxanthomonas sp. F37]
ATGGCCCGCGGCATCAACAAAGTCATCCTGGTCGGCAATCTCGGCAACGACCCCGAAACCCGCTACACCCAGGGCGGCAT
GGCGATCACCCGGATCAGCCTGGCCACCACGAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTGTATGTCGAAGGT
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGACAGGAGAAGTACTCCACCGACATCATCGCCGACGAGATGCAGAT
GCTGGGCGGCCGTGAAGGCGGCGGTGGTGGCGCGGGCGGAGACCGCCCGGCGCGGGCCCCGCGGCAGGACTACGGCAACC
AGGGCGGCGGCCAGCGCCGTCCGGCGCCCGCACCGGCTTCGCAGCCGGCACCGATGGACGACTTCGCGGATGACGATATT
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.864

100

0.531
  ssb Glaesserella parasuis strain SC1401

47.486

100

0.525
  ssb Neisseria gonorrhoeae MS11

45.402

100

0.488
  ssb Neisseria meningitidis MC58

44.828

100

0.481