Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   MUU77_RS03865 Genome accession   NZ_CP095187
Coordinates   845699..846757 (+) Length   352 a.a.
NCBI ID   WP_162108769.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. F37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 840699..851757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU77_RS03845 (MUU77_03845) - 841283..841783 (-) 501 WP_245091783.1 cysteine hydrolase family protein -
  MUU77_RS03850 (MUU77_03850) - 841889..842293 (+) 405 WP_245091786.1 Lrp/AsnC family transcriptional regulator -
  MUU77_RS03855 (MUU77_03855) - 842303..842959 (-) 657 WP_245091788.1 hypothetical protein -
  MUU77_RS03860 (MUU77_03860) - 843059..845482 (-) 2424 WP_245091790.1 penicillin-binding protein 1A -
  MUU77_RS03865 (MUU77_03865) pilM 845699..846757 (+) 1059 WP_162108769.1 pilus assembly protein PilM Machinery gene
  MUU77_RS03870 (MUU77_03870) - 846757..847527 (+) 771 WP_245091794.1 PilN domain-containing protein -
  MUU77_RS03875 (MUU77_03875) pilO 847524..848210 (+) 687 WP_245091797.1 type 4a pilus biogenesis protein PilO -
  MUU77_RS03880 (MUU77_03880) - 848207..848734 (+) 528 WP_245091799.1 pilus assembly protein PilP -
  MUU77_RS03885 (MUU77_03885) - 848749..850671 (+) 1923 WP_245091801.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37933.61 Da        Isoelectric Point: 4.3967

>NTDB_id=676029 MUU77_RS03865 WP_162108769.1 845699..846757(+) (pilM) [Pseudoxanthomonas sp. F37]
MGLIPKSQSPLIGVDISSTAVKLLQLSRVGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVNRAGTKAKYAAAA
VAGSAVITKIIPMPADLDENDLEAQVELEAVNYIPYPIEEVNIDFEVLGPMPNNPEMVQVLLAASRSENVELRQSALELG
GLTARVMDVEAFAVENAFALMASDLPVPQDGVVALVDIGATMTTLNVLRRGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDQIVLAGGCAALPGLPEMVEEQLGVPTVVANPLA
QMTLGPRVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=676029 MUU77_RS03865 WP_162108769.1 845699..846757(+) (pilM) [Pseudoxanthomonas sp. F37]
GTGGGGCTAATCCCAAAAAGCCAGTCGCCGCTGATCGGCGTCGACATCAGTTCGACTGCGGTAAAGCTGCTGCAGCTCTC
GCGCGTGGGCAACCGTTTCAGGGTTGAGCACTACGCCGTCGAGCCGCTGCCGCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCGGTCGGCGAAGCCATCCGCCGCGCGGTGAACCGTGCCGGCACCAAGGCCAAGTACGCGGCGGCGGCC
GTCGCCGGGTCCGCGGTGATCACCAAGATCATCCCCATGCCGGCCGACCTGGACGAGAACGACCTGGAAGCGCAGGTCGA
ACTGGAAGCCGTCAACTACATTCCGTACCCCATCGAGGAAGTGAACATCGACTTCGAGGTGCTGGGCCCCATGCCCAACA
ACCCGGAGATGGTGCAGGTGCTGCTGGCGGCGTCGCGTTCGGAGAACGTCGAACTGCGCCAGTCGGCCCTCGAACTGGGC
GGCCTGACCGCGCGCGTCATGGACGTGGAAGCCTTTGCGGTGGAAAACGCCTTCGCCCTGATGGCCAGCGACCTGCCGGT
GCCGCAGGACGGCGTGGTCGCGCTGGTCGACATCGGCGCGACGATGACCACGCTGAACGTCCTGCGCCGCGGCCGCAGCC
TCTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGGTGATGCGCCGGTACGGGCTGACCTACGAGGAA
GCGGGCCTGGCCAAGCGCCAGGGCGGCCTGCCCGAAAGCTACGAAGTCGAAGTGCTCGAGCCCTTCAAGGAAGCCACCGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAGTTCAACCGCGTCGACCAGATCGTCCTGGCGGGTG
GTTGCGCGGCGTTGCCCGGCCTGCCGGAGATGGTGGAGGAGCAACTGGGCGTGCCCACCGTCGTCGCCAACCCGCTCGCG
CAGATGACCCTGGGCCCGCGCGTGCAGGCGCATGCGCTGGCGCAGGACGCTCCCGCGCTGATGATCGCCACCGGCCTGGC
TTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.286

99.432

0.5
  pilM Legionella pneumophila strain ERS1305867

45.869

99.716

0.457