Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   MUY23_RS00270 Genome accession   NZ_CP095162
Coordinates   50829..51122 (+) Length   97 a.a.
NCBI ID   WP_002936548.1    Uniprot ID   A0AAJ2PIZ8
Organism   Streptococcus suis strain TJS75     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45829..56122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY23_RS00240 - 47003..47368 (+) 366 WP_002936568.1 DUF1033 family protein -
  MUY23_RS00245 - 47403..48353 (-) 951 WP_002936565.1 S66 peptidase family protein -
  MUY23_RS00250 comYA 48439..49389 (+) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  MUY23_RS00255 comYB 49301..50173 (+) 873 WP_053866392.1 type II secretion system F family protein Machinery gene
  MUY23_RS00260 comYC 50175..50456 (+) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  MUY23_RS00265 comGD 50437..50745 (+) 309 WP_002936549.1 competence type IV pilus minor pilin ComGD -
  MUY23_RS00270 comYE 50829..51122 (+) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  MUY23_RS00275 comGF/cglF 51109..51543 (+) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUY23_RS00280 comGG 51521..51931 (+) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  MUY23_RS00285 comYH 51988..52941 (+) 954 WP_002936545.1 class I SAM-dependent methyltransferase Machinery gene
  MUY23_RS00290 - 52991..54178 (+) 1188 WP_002936543.1 acetate kinase -
  MUY23_RS00295 - 54493..55044 (+) 552 WP_014636756.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10746.66 Da        Isoelectric Point: 10.2088

>NTDB_id=675817 MUY23_RS00270 WP_002936548.1 50829..51122(+) (comYE) [Streptococcus suis strain TJS75]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTGQDNLALNGVTVQVQRTAD
KIIVFREGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=675817 MUY23_RS00270 WP_002936548.1 50829..51122(+) (comYE) [Streptococcus suis strain TJS75]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTGGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACTAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAGATCATTGTTTTCCGCGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371