Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KF715C_RS19275 Genome accession   NZ_AP015029
Coordinates   4161585..4162082 (+) Length   165 a.a.
NCBI ID   WP_096426498.1    Uniprot ID   -
Organism   Pseudomonas putida strain KF715     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4156585..4167082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KF715C_RS19250 (KF715C_ch37600) - 4158559..4159107 (+) 549 WP_096426493.1 hypothetical protein -
  KF715C_RS19260 (KF715C_ch37620) - 4159534..4159860 (-) 327 WP_096426495.1 DUF1654 domain-containing protein -
  KF715C_RS19265 (KF715C_ch37630) - 4160855..4161238 (+) 384 WP_096426496.1 response regulator transcription factor -
  KF715C_RS19270 (KF715C_ch37640) - 4161256..4161588 (+) 333 WP_096426497.1 hypothetical protein -
  KF715C_RS19275 (KF715C_ch37650) ssb 4161585..4162082 (+) 498 WP_096426498.1 single-stranded DNA-binding protein Machinery gene
  KF715C_RS36035 - 4162085..4162246 (+) 162 WP_172901749.1 hypothetical protein -
  KF715C_RS19280 (KF715C_ch37660) - 4162335..4162682 (+) 348 WP_096426499.1 hypothetical protein -
  KF715C_RS19285 (KF715C_ch37670) - 4162709..4163524 (+) 816 WP_096426500.1 DUF2303 family protein -
  KF715C_RS19290 (KF715C_ch37690) - 4164027..4164788 (+) 762 WP_096426501.1 hypothetical protein -
  KF715C_RS19300 (KF715C_ch37710) - 4165145..4167037 (+) 1893 WP_096426503.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18640.83 Da        Isoelectric Point: 7.3216

>NTDB_id=67570 KF715C_RS19275 WP_096426498.1 4161585..4162082(+) (ssb) [Pseudomonas putida strain KF715]
MSRGVNKVFLVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEVHVDMRGTMQLLGSRPQGQQPGQVPDRQPQQRRPPPQQQNQQAAPPDHDSFDDDIPFAPLH
YLAGA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=67570 KF715C_RS19275 WP_096426498.1 4161585..4162082(+) (ssb) [Pseudomonas putida strain KF715]
ATGAGCCGCGGGGTAAACAAGGTGTTCCTGGTCGGCACCTGTGGCCAGGACCCGGAAGTGCGCTACCTGCCGAACGGCAA
CGCCGTTACCAACCTGAGCCTGGCCACCAGCGAGCAATGGACTGACAAGCAGTCGGGGCAGAAGGTCGAGCGCACCGAAT
GGCACCGCGTGGTGCTGTTCGGCAAGGTCGCGGAGATCGCCGGCGAATACCTGCGCAAGGGCTCGCAGTGCTACATCGAA
GGCAAGCTGCAAACTCGCGAGTGGGAGAAGGACGGCATCAAGCGCTACACCACTGAGGTGCACGTCGACATGCGCGGAAC
GATGCAGCTGCTCGGCAGCCGGCCGCAGGGTCAGCAGCCCGGGCAAGTGCCAGATCGGCAGCCGCAGCAGCGCCGGCCAC
CGCCTCAGCAGCAAAACCAGCAGGCCGCGCCGCCGGATCACGACAGCTTTGACGACGACATCCCGTTCGCCCCGCTCCAC
TACCTCGCCGGTGCGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.429

100

0.588
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.503
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.467
  ssb Neisseria meningitidis MC58

42.373

100

0.455

Multiple sequence alignment