Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KF715C_RS02670 Genome accession   NZ_AP015029
Coordinates   579439..579987 (+) Length   182 a.a.
NCBI ID   WP_016484656.1    Uniprot ID   -
Organism   Pseudomonas putida strain KF715     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 574439..584987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KF715C_RS02655 (KF715C_ch5060) bfr 574533..574997 (+) 465 WP_003255449.1 bacterioferritin -
  KF715C_RS02660 (KF715C_ch5070) uvrA 575071..577905 (-) 2835 WP_172901722.1 excinuclease ABC subunit UvrA -
  KF715C_RS02665 (KF715C_ch5080) - 578035..579429 (+) 1395 WP_016484655.1 MFS transporter -
  KF715C_RS02670 (KF715C_ch5090) ssb 579439..579987 (+) 549 WP_016484656.1 single-stranded DNA-binding protein Machinery gene
  KF715C_RS02675 (KF715C_ch5100) - 580189..581583 (-) 1395 WP_023048325.1 PLP-dependent aminotransferase family protein -
  KF715C_RS02680 (KF715C_ch5110) - 581994..583019 (+) 1026 WP_060519291.1 TauD/TfdA family dioxygenase -
  KF715C_RS02685 (KF715C_ch5120) - 583051..583836 (+) 786 WP_016484669.1 sulfite exporter TauE/SafE family protein -
  KF715C_RS02690 (KF715C_ch5130) - 583861..584622 (+) 762 WP_016484670.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20213.33 Da        Isoelectric Point: 5.9286

>NTDB_id=67558 KF715C_RS02670 WP_016484656.1 579439..579987(+) (ssb) [Pseudomonas putida strain KF715]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGQPQQYNQAPPRQQAQRPQQAPQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=67558 KF715C_RS02670 WP_016484656.1 579439..579987(+) (ssb) [Pseudomonas putida strain KF715]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCACAGGGTCAGCAGCAGGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACAACC
AGGGTGGCCAGCCCCAGCAATACAACCAGGCACCGCCTCGCCAACAGGCTCAGCGCCCGCAACAGGCCCCTCAGCGCCCG
GCGCCGCAACAGCCCGCGCCTCAGCCGGCTGCGGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.219

100

0.588
  ssb Glaesserella parasuis strain SC1401

50

100

0.522
  ssb Neisseria meningitidis MC58

48.333

98.901

0.478
  ssb Neisseria gonorrhoeae MS11

48.333

98.901

0.478

Multiple sequence alignment