Detailed information NTG0067556

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: JMUB0001_RS11880
• Genome accession: NZ_AP014956
• Coordinates: 2427153..2427662 (-)
• Length: 169 a.a.
• NCBI ID: WP_023349922.1
• Uniprot ID: A0A7X9WHU6
• Organism: Staphylococcus capitis strain TW2795
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2422153..2432662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMUB0001_RS11840 (JMUB0001_2320)	-	2423091..2423345 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
JMUB0001_RS11845 (JMUB0001_2321)	-	2423647..2423907 (+)	261	WP_002434577.1	hypothetical protein	-
JMUB0001_RS11850 (JMUB0001_2322)	-	2423911..2424660 (-)	750	WP_030061295.1	amidohydrolase family protein	-
JMUB0001_RS11855 (JMUB0001_2323)	-	2424817..2425074 (+)	258	WP_030061297.1	helix-turn-helix transcriptional regulator	-
JMUB0001_RS11860 (JMUB0001_2324)	-	2425145..2425498 (-)	354	WP_023349918.1	hypothetical protein	-
JMUB0001_RS11865 (JMUB0001_2325)	-	2425582..2426145 (-)	564	WP_030061299.1	DUF5067 domain-containing protein	-
JMUB0001_RS11870 (JMUB0001_2326)	-	2426282..2426536 (-)	255	WP_096389425.1	hypothetical protein	-
JMUB0001_RS11875 (JMUB0001_2327)	rpsR	2426864..2427106 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
JMUB0001_RS11880 (JMUB0001_2328)	ssbA	2427153..2427662 (-)	510	WP_023349922.1	single-stranded DNA-binding protein	Machinery gene
JMUB0001_RS11885 (JMUB0001_2329)	rpsF	2427684..2427980 (-)	297	WP_002434058.1	30S ribosomal protein S6	-
JMUB0001_RS11890 (JMUB0001_2330)	-	2428113..2428283 (-)	171	Protein_2284	recombinase family protein	-
JMUB0001_RS11895 (JMUB0001_2331)	-	2428393..2429139 (-)	747	WP_002434512.1	HAD family hydrolase	-
JMUB0001_RS11900 (JMUB0001_2332)	-	2429143..2429559 (-)	417	WP_227489929.1	NUDIX domain-containing protein	-
JMUB0001_RS11905 (JMUB0001_2333)	-	2429556..2430446 (-)	891	WP_030061331.1	DMT family transporter	-
JMUB0001_RS11910 (JMUB0001_2334)	-	2430446..2430829 (-)	384	WP_030061333.1	NUDIX domain-containing protein	-
JMUB0001_RS11915 (JMUB0001_2335)	-	2430842..2431519 (-)	678	WP_030061334.1	hypothetical protein	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18672.18 Da
• Isoelectric Point: 4.5778

>NTDB_id=67556 JMUB0001_RS11880 WP_023349922.1 2427153..2427662(-) (ssbA) [Staphylococcus capitis strain TW2795]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=67556 JMUB0001_RS11880 WP_023349922.1 2427153..2427662(-) (ssbA) [Staphylococcus capitis strain TW2795]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A7X9WHU6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361