Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA90_RS13360 Genome accession   NZ_CP095096
Coordinates   2710994..2711512 (-) Length   172 a.a.
NCBI ID   WP_262587443.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2705994..2716512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA90_RS13340 (MUA90_13355) - 2706645..2707061 (-) 417 WP_262587441.1 Msa family membrane protein -
  MUA90_RS14130 - 2707083..2707379 (-) 297 WP_398577389.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  MUA90_RS13345 (MUA90_13360) - 2708034..2708543 (-) 510 WP_262587442.1 hypothetical protein -
  MUA90_RS13350 (MUA90_13365) - 2709152..2710474 (-) 1323 WP_262585957.1 ISL3 family transposase -
  MUA90_RS13355 (MUA90_13370) rpsR 2710698..2710940 (-) 243 WP_002480324.1 30S ribosomal protein S18 -
  MUA90_RS13360 (MUA90_13375) ssbA 2710994..2711512 (-) 519 WP_262587443.1 single-stranded DNA-binding protein Machinery gene
  MUA90_RS13365 (MUA90_13380) rpsF 2711534..2711830 (-) 297 WP_105994450.1 30S ribosomal protein S6 -
  MUA90_RS13370 - 2711993..2712223 (-) 231 WP_262587446.1 excalibur calcium-binding domain-containing protein -
  MUA90_RS13975 - 2712147..2712995 (-) 849 WP_316959792.1 thermonuclease family protein -
  MUA90_RS13380 (MUA90_13395) argF 2713395..2714399 (+) 1005 WP_262587448.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19014.62 Da        Isoelectric Point: 5.1953

>NTDB_id=675391 MUA90_RS13360 WP_262587443.1 2710994..2711512(-) (ssbA) [Staphylococcus sp. IVB6181]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSQNQRHGQQSGGSNQFQNYGQNYGGQQQGQNTSSYQNNNSSNAGQSDNPFANAN
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=675391 MUA90_RS13360 WP_262587443.1 2710994..2711512(-) (ssbA) [Staphylococcus sp. IVB6181]
ATGCTTAACAGAGTTGTATTAGTAGGCCGTTTAACAAAGGATCCTGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTTTAGCGGTTAATCGTACGTTTACGAATGCGCAAGGGGAACGCGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAACAAGCAGAAAACGTAAGCAATTACTTGTTTAAAGGCAGTCTTGCAGGCGTTGATGGTCGCTTACAATCACGC
AGTTATGAAAACCAAGAAGGACGCCGTATCTTTGTTACTGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCTAAATC
ACAAAACCAACGTCATGGCCAACAATCTGGCGGTAGCAACCAATTCCAGAATTATGGTCAAAACTACGGTGGTCAACAAC
AAGGACAAAATACGTCATCTTATCAAAACAACAATTCATCAAATGCTGGACAATCAGATAATCCATTTGCGAACGCAAAC
GGACCTATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.205

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.576
  ssb Glaesserella parasuis strain SC1401

35.912

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.953

0.372