Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA89_RS04340 Genome accession   NZ_CP109379
Coordinates   855438..856118 (+) Length   226 a.a.
NCBI ID   WP_215144191.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01546     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 850438..861118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA89_RS04315 (OHA89_04315) - 850975..852075 (+) 1101 WP_406365312.1 trypsin-like peptidase domain-containing protein -
  OHA89_RS04320 (OHA89_04320) - 852029..852421 (-) 393 WP_266612956.1 hypothetical protein -
  OHA89_RS04325 (OHA89_04325) - 852510..853052 (-) 543 WP_406365314.1 HXXEE domain-containing protein -
  OHA89_RS04330 (OHA89_04330) - 853049..853996 (-) 948 WP_266612958.1 AEC family transporter -
  OHA89_RS04335 (OHA89_04335) - 854071..855441 (+) 1371 WP_406365317.1 sensor histidine kinase -
  OHA89_RS04340 (OHA89_04340) vraR 855438..856118 (+) 681 WP_215144191.1 response regulator transcription factor Regulator
  OHA89_RS04345 (OHA89_04345) - 856269..857312 (+) 1044 WP_406365319.1 alpha/beta hydrolase -
  OHA89_RS04350 (OHA89_04350) - 857309..858538 (+) 1230 WP_266612962.1 acyltransferase -
  OHA89_RS04355 (OHA89_04355) - 858609..859031 (-) 423 WP_215144187.1 DUF350 domain-containing protein -
  OHA89_RS04360 (OHA89_04360) - 859127..860893 (+) 1767 WP_406365322.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24320.10 Da        Isoelectric Point: 5.3448

>NTDB_id=675096 OHA89_RS04340 WP_215144191.1 855438..856118(+) (vraR) [Streptomyces sp. NBC_01546]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGVQVSRSTHPDVVLMDVRMPEMDGLTAARELLDPPPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVQQRPAPRKDPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGVVRPGDSA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=675096 OHA89_RS04340 WP_215144191.1 855438..856118(+) (vraR) [Streptomyces sp. NBC_01546]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCCGCGCTGCTGTCGGCGCAGGCCGA
CATCGATGTGGTGGGCGAGGCGCCCGACGGGCGGCAGGGCGTGCAGGTCTCCCGCTCCACGCACCCCGACGTGGTACTGA
TGGACGTGCGGATGCCGGAGATGGACGGGCTCACGGCGGCCCGGGAGCTCCTCGATCCCCCGCCGGGGGTGGTGCACCGG
CCGAAGGTTCTGATGCTCACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCGGGCGCGTCCGGGTTCCT
GCTGAAGGACGCGCCGCCGGCCGACCTGATCGCGGCGGTACGGGTCGTCGCGTCGGGCGAGGCGCTGTTGGCGCCCTCGG
TGACCCGGCGGCTGATCGCGGACTTCGTGCAGCAGCGGCCGGCGCCGCGCAAGGATCCGGCGCTGCGGCTGAACGGCCTC
ACCCCGCGTGAGACCGAGGTACTGGAGCTCATCGCGCGCGGGCTGTCGAACCAGGAGATCGCGGGCCATCTGGTGCTGGC
GGAGCAGACGGTCAAGACGCACATCGGGCGGGTGCTGGCCAAGCTCGACCTGCGGGACCGGGCCCAGGCCGTGATCTTCG
CGTACGAGGCGGGAGTGGTGCGGCCGGGCGACTCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.176

97.788

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

37.445

100

0.376