Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUO15_RS14220 Genome accession   NZ_CP095075
Coordinates   2740624..2741109 (+) Length   161 a.a.
NCBI ID   WP_245030118.1    Uniprot ID   -
Organism   Halobacillus amylolyticus strain SSHM10-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2735624..2746109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO15_RS14190 (MUO15_14190) yyaC 2735992..2736591 (-) 600 WP_245030105.1 spore protease YyaC -
  MUO15_RS14195 (MUO15_14195) - 2736704..2737699 (+) 996 WP_245036030.1 hypothetical protein -
  MUO15_RS14200 (MUO15_14200) - 2737749..2738633 (+) 885 WP_245030106.1 mechanosensitive ion channel family protein -
  MUO15_RS14205 (MUO15_14205) - 2738657..2738851 (+) 195 WP_245030107.1 DUF951 domain-containing protein -
  MUO15_RS14210 (MUO15_14210) ychF 2739079..2740176 (+) 1098 WP_245030113.1 redox-regulated ATPase YchF -
  MUO15_RS14215 (MUO15_14215) rpsF 2740321..2740611 (+) 291 WP_245030114.1 30S ribosomal protein S6 -
  MUO15_RS14220 (MUO15_14220) ssbA 2740624..2741109 (+) 486 WP_245030118.1 single-stranded DNA-binding protein Machinery gene
  MUO15_RS14225 (MUO15_14225) rpsR 2741131..2741358 (+) 228 WP_244755351.1 30S ribosomal protein S18 -
  MUO15_RS14230 (MUO15_14230) - 2741479..2741916 (-) 438 WP_245030120.1 Rrf2 family transcriptional regulator -
  MUO15_RS14235 (MUO15_14235) hmpA 2742108..2743328 (+) 1221 WP_245030122.1 NO-inducible flavohemoprotein -
  MUO15_RS14240 (MUO15_14240) - 2743383..2745062 (-) 1680 WP_245030124.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17555.17 Da        Isoelectric Point: 4.4707

>NTDB_id=675054 MUO15_RS14220 WP_245030118.1 2740624..2741109(+) (ssbA) [Halobacillus amylolyticus strain SSHM10-5]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTVAVNRPFSNNQGDRDADFINCVVWRRAAENLANFMNKGSLVGVDGRLQSR
SFDNQEGKRVFVTEVVADSVQFLESKGASQGGGSQQGSGFQPNQNQQPTGNNFGSNNNKKDDDPFADNGEPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=675054 MUO15_RS14220 WP_245030118.1 2740624..2741109(+) (ssbA) [Halobacillus amylolyticus strain SSHM10-5]
ATGTTAAATCGTGTCGTTTTAGTCGGCAGATTAACGAAGGATCCGGATTTACGCTATACGCCAAACGGAGTGGCTGTTGC
CAATTTCACTGTTGCAGTGAATCGACCATTCTCTAACAATCAGGGTGATCGTGATGCAGATTTCATTAACTGCGTTGTTT
GGAGACGAGCTGCTGAAAACCTCGCCAACTTTATGAACAAAGGCAGCCTTGTCGGTGTGGACGGGCGTTTACAGTCTCGA
AGCTTCGATAATCAAGAAGGTAAGCGTGTGTTTGTAACAGAAGTTGTTGCGGACAGCGTACAGTTCCTAGAATCTAAAGG
TGCTTCACAAGGTGGAGGCAGTCAACAAGGTTCAGGATTCCAGCCAAATCAGAATCAGCAACCAACAGGAAATAACTTCG
GTTCTAATAATAATAAAAAAGATGATGATCCATTCGCAGATAATGGAGAACCCATCGACATCTCAGATGATGATTTACCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.286

100

0.677
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.634
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

65.839

0.398
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.385