Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUO14_RS11570 Genome accession   NZ_CP095074
Coordinates   2359932..2360417 (-) Length   161 a.a.
NCBI ID   WP_244755352.1    Uniprot ID   -
Organism   Halobacillus shinanisalinarum strain SSTM10-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2354932..2365417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO14_RS11550 (MUO14_11550) - 2355808..2357490 (+) 1683 WP_244755348.1 peptide ABC transporter substrate-binding protein -
  MUO14_RS11555 (MUO14_11555) hmpA 2357546..2358766 (-) 1221 WP_244755349.1 NO-inducible flavohemoprotein -
  MUO14_RS11560 (MUO14_11560) - 2359144..2359581 (+) 438 WP_244755350.1 Rrf2 family transcriptional regulator -
  MUO14_RS11565 (MUO14_11565) rpsR 2359681..2359908 (-) 228 WP_244755351.1 30S ribosomal protein S18 -
  MUO14_RS11570 (MUO14_11570) ssbA 2359932..2360417 (-) 486 WP_244755352.1 single-stranded DNA-binding protein Machinery gene
  MUO14_RS11575 (MUO14_11575) rpsF 2360430..2360720 (-) 291 WP_244755353.1 30S ribosomal protein S6 -
  MUO14_RS11580 (MUO14_11580) ychF 2360865..2361962 (-) 1098 WP_244755354.1 redox-regulated ATPase YchF -
  MUO14_RS11585 (MUO14_11585) - 2362189..2362383 (-) 195 WP_244755355.1 DUF951 domain-containing protein -
  MUO14_RS11590 (MUO14_11590) - 2362405..2363289 (-) 885 WP_244755356.1 mechanosensitive ion channel family protein -
  MUO14_RS11595 (MUO14_11595) - 2363340..2364335 (-) 996 WP_244755566.1 hypothetical protein -
  MUO14_RS11600 (MUO14_11600) yyaC 2364448..2365047 (+) 600 WP_244755357.1 spore protease YyaC -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17553.15 Da        Isoelectric Point: 4.4707

>NTDB_id=675011 MUO14_RS11570 WP_244755352.1 2359932..2360417(-) (ssbA) [Halobacillus shinanisalinarum strain SSTM10-2]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTVAVNRPFSNNQGDRDADFINCVVWRRAAENLANFMNKGSLVGVDGRLQSR
SFDNQEGKRVFVTEVVADSVQFLESKGSSQGGGNPQGSGFQPNQNQQPSGNNFGSNNNKKDDDPFADNGEPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=675011 MUO14_RS11570 WP_244755352.1 2359932..2360417(-) (ssbA) [Halobacillus shinanisalinarum strain SSTM10-2]
ATGTTAAATCGTGTCGTTTTAGTCGGCAGATTAACGAAGGATCCGGATTTACGCTATACGCCAAATGGAGTGGCTGTTGC
CAATTTCACTGTTGCAGTGAATCGCCCATTCTCTAATAATCAGGGTGATCGTGATGCAGATTTTATTAATTGCGTTGTTT
GGAGACGGGCTGCTGAAAACCTCGCCAACTTTATGAACAAAGGTAGTCTTGTTGGTGTGGACGGGCGTTTACAGTCTCGA
AGCTTCGATAATCAAGAAGGTAAGCGTGTGTTTGTAACAGAAGTTGTTGCGGACAGCGTACAGTTCCTAGAATCTAAAGG
TTCTTCACAAGGTGGAGGTAACCCACAAGGTTCAGGATTCCAGCCAAATCAGAATCAGCAACCATCAGGAAATAACTTCG
GTTCTAATAATAATAAAAAAGATGATGATCCATTCGCAGATAATGGAGAACCCATCGACATCTCAGATGATGATTTACCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.209

100

0.665
  ssb Latilactobacillus sakei subsp. sakei 23K

56.977

100

0.609
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

65.839

0.398
  ssb Glaesserella parasuis strain SC1401

35.593

100

0.391