Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUK70_RS19950 Genome accession   NZ_CP094997
Coordinates   4695444..4695923 (-) Length   159 a.a.
NCBI ID   WP_234654841.1    Uniprot ID   A0A9X1TDZ6
Organism   Dyadobacter chenwenxiniae strain LJ419     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4690444..4700923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK70_RS19935 (MUK70_19935) - 4692131..4693570 (+) 1440 WP_234654835.1 RagB/SusD family nutrient uptake outer membrane protein -
  MUK70_RS19940 (MUK70_19940) - 4693574..4693990 (+) 417 WP_234654837.1 hypothetical protein -
  MUK70_RS19945 (MUK70_19945) - 4693992..4695332 (-) 1341 WP_234654839.1 transporter associated domain-containing protein -
  MUK70_RS19950 (MUK70_19950) ssb 4695444..4695923 (-) 480 WP_234654841.1 single-stranded DNA-binding protein Machinery gene
  MUK70_RS19955 (MUK70_19955) - 4695984..4697189 (-) 1206 WP_234654843.1 Gfo/Idh/MocA family protein -
  MUK70_RS19960 (MUK70_19960) - 4697245..4698102 (-) 858 WP_234607764.1 phytanoyl-CoA dioxygenase family protein -
  MUK70_RS19965 (MUK70_19965) mutY 4698209..4699288 (-) 1080 WP_234654844.1 A/G-specific adenine glycosylase -
  MUK70_RS19970 (MUK70_19970) - 4699448..4699753 (+) 306 WP_026631310.1 HU family DNA-binding protein -
  MUK70_RS19975 (MUK70_19975) - 4699785..4700627 (+) 843 WP_234654846.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 16885.53 Da        Isoelectric Point: 4.9752

>NTDB_id=674729 MUK70_RS19950 WP_234654841.1 4695444..4695923(-) (ssb) [Dyadobacter chenwenxiniae strain LJ419]
MAGSVNKVILIGNLGSDPEVRYLESGSAVAKFNIATTESYTNKSGERVDNTEWHRIELWEGLAKVAEKYLKKGNQVYIEG
RIRTDSWTDKEGQQRTGVTIRANSMTLLGGPAGSGGGGEGNNGGYAQQSSAPRSGQAPRSSDPIPPSLAAGNDDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=674729 MUK70_RS19950 WP_234654841.1 4695444..4695923(-) (ssb) [Dyadobacter chenwenxiniae strain LJ419]
ATGGCAGGAAGTGTTAACAAGGTCATTTTAATAGGCAATCTGGGCAGCGACCCGGAAGTGAGATATCTGGAAAGCGGCTC
AGCAGTTGCTAAGTTCAACATTGCCACCACAGAGTCATACACCAACAAAAGCGGCGAACGCGTCGATAATACAGAATGGC
ACCGCATTGAGCTTTGGGAAGGATTAGCCAAAGTCGCTGAGAAATATTTGAAAAAAGGCAATCAGGTCTACATTGAAGGT
CGAATCCGCACCGATAGCTGGACGGACAAGGAAGGTCAGCAAAGAACGGGCGTTACGATCCGTGCGAACAGCATGACATT
GCTAGGCGGTCCCGCTGGCTCCGGAGGCGGCGGAGAAGGAAATAATGGCGGTTATGCGCAGCAATCTTCTGCACCACGTT
CAGGCCAGGCACCAAGATCATCGGACCCGATCCCGCCGTCACTGGCAGCTGGTAATGATGATGACGACCTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.349

100

0.491
  ssb Neisseria meningitidis MC58

43.678

100

0.478
  ssb Neisseria gonorrhoeae MS11

42.775

100

0.465
  ssb Glaesserella parasuis strain SC1401

39.779

100

0.453