Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MTZ49_RS02070 Genome accession   NZ_CP094972
Coordinates   422891..423427 (+) Length   178 a.a.
NCBI ID   WP_264746764.1    Uniprot ID   -
Organism   Entomomonas sp. E2T0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 417891..428427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTZ49_RS02045 (MTZ49_02040) - 418272..419228 (-) 957 WP_264746760.1 glycosyltransferase -
  MTZ49_RS02050 (MTZ49_02045) argH 419319..420710 (+) 1392 WP_413774168.1 argininosuccinate lyase -
  MTZ49_RS02055 (MTZ49_02050) - 420797..421102 (-) 306 WP_264746761.1 hypothetical protein -
  MTZ49_RS02060 (MTZ49_02055) - 421517..422038 (+) 522 WP_264746762.1 RrF2 family transcriptional regulator -
  MTZ49_RS02065 (MTZ49_02060) - 422152..422787 (+) 636 WP_264746763.1 FMN-dependent NADH-azoreductase -
  MTZ49_RS02070 (MTZ49_02065) ssb 422891..423427 (+) 537 WP_264746764.1 single-stranded DNA-binding protein Machinery gene
  MTZ49_RS02075 (MTZ49_02070) adhP 423639..424661 (+) 1023 WP_264746765.1 alcohol dehydrogenase AdhP -
  MTZ49_RS02080 (MTZ49_02075) - 424827..425165 (+) 339 WP_264746766.1 zinc ribbon domain-containing protein YjdM -
  MTZ49_RS02085 (MTZ49_02080) panC 425336..426166 (+) 831 WP_264746767.1 pantoate--beta-alanine ligase -
  MTZ49_RS02090 (MTZ49_02085) znuB 426219..427010 (-) 792 WP_264746768.1 zinc ABC transporter permease subunit ZnuB -
  MTZ49_RS02095 (MTZ49_02090) znuC 427003..427770 (-) 768 WP_264747810.1 zinc ABC transporter ATP-binding protein ZnuC -
  MTZ49_RS02100 (MTZ49_02095) - 427776..428261 (-) 486 WP_264746769.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19890.01 Da        Isoelectric Point: 4.9401

>NTDB_id=674615 MTZ49_RS02070 WP_264746764.1 422891..423427(+) (ssb) [Entomomonas sp. E2T0]
MAARGINKVILVGNIGNEPEMRYMPNGNAVATVSLATSDAWKDKNTGEQQERTEWHRVVFFGKLAEIVGQYVHKGSKLYV
EGRLQTRKWTDQQGVDRYSTEVVVDMGGTMQLLDSRQGDAGGYQPPQQPYQQQAPAGNQYGGQPAPAQQPMQQPQNRPQQ
QPQQPAPNFDDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=674615 MTZ49_RS02070 WP_264746764.1 422891..423427(+) (ssb) [Entomomonas sp. E2T0]
ATGGCAGCTAGAGGTATTAACAAAGTTATATTAGTAGGCAATATCGGTAATGAACCAGAAATGCGCTATATGCCTAATGG
CAATGCTGTAGCTACTGTTTCATTAGCTACTTCTGACGCATGGAAAGATAAAAATACAGGTGAACAACAAGAGCGTACAG
AATGGCATCGCGTAGTATTTTTTGGCAAGCTTGCTGAAATTGTTGGTCAATATGTACATAAAGGTTCTAAACTTTACGTG
GAAGGCCGTTTACAAACCCGTAAATGGACCGACCAACAAGGTGTAGATCGCTACTCTACCGAAGTGGTAGTCGATATGGG
CGGTACAATGCAATTACTAGATAGCCGCCAAGGTGATGCGGGTGGTTACCAACCTCCCCAACAACCTTATCAACAACAAG
CACCTGCTGGCAACCAATATGGCGGACAGCCTGCACCAGCACAACAACCTATGCAGCAACCACAAAATCGTCCTCAACAG
CAGCCACAACAACCTGCACCAAACTTTGACGATTTTGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.435

100

0.573
  ssb Glaesserella parasuis strain SC1401

52.128

100

0.551
  ssb Neisseria gonorrhoeae MS11

43.646

100

0.444
  ssb Neisseria meningitidis MC58

42.308

100

0.433