Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUB29_RS18920 Genome accession   NZ_CP094943
Coordinates   4298848..4299393 (+) Length   181 a.a.
NCBI ID   WP_013319380.1    Uniprot ID   -
Organism   Dickeya dadantii strain FZ06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4299472..4299828 4298848..4299393 flank 79


Gene organization within MGE regions


Location: 4298848..4299828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB29_RS18920 ssb 4298848..4299393 (+) 546 WP_013319380.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19464.46 Da        Isoelectric Point: 5.2440

>NTDB_id=674368 MUB29_RS18920 WP_013319380.1 4298848..4299393(+) (ssb) [Dickeya dadantii strain FZ06]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNPQQGGWGQPQQPQQANQFSGGGQSRP
QQSAPMPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=674368 MUB29_RS18920 WP_013319380.1 4298848..4299393(+) (ssb) [Dickeya dadantii strain FZ06]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTGGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACCGAAGTGGTAGTCGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGCTCCGGCCGGCGGCGGCATGGGCAACAACGCGGGCGGCA
ATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGCTAACCAGTTCAGCGGCGGCGGTCAGTCCCGTCCG
CAGCAAAGCGCGCCGATGCCGAGCAACGAACCGCCGATGGATTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.41

100

0.762
  ssb Glaesserella parasuis strain SC1401

55.495

100

0.558
  ssb Neisseria meningitidis MC58

45.989

100

0.475
  ssb Neisseria gonorrhoeae MS11

45.989

100

0.475